GBrowse Details

Vigan.05G239200.01

Basic Information:
Name: Vigan.05G239200.01
Multiple alignment
Variant Information
Position: Chr05:28837626..28840908 (- strand)
Length: 3283
Functional Information:
Description: Similar to Membrin. [V7BNW0, Phaseolus vulgaris]
GO: Biological Process: transport (GO:0006810)
Cellular Component: Golgi stack (GO:0005795)
InterPro: GOSR2/Membrin/Bos1 (IPR027027)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.06,21.51,9.10,13.60,15.22,8.08,9.94,9.96
Arabidopsis thaliana homolog: AT2G36900.1
Automatic updates:
Name: NM_001255192 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max membrin-11-like (LOC100803902), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:28837626..28837998 (- strand)
Length: 373
Type: three_prime_UTR
Position: Chr05:28837999..28838160 (- strand)
Length: 162
Type: CDS
Position: Chr05:28838863..28839012 (- strand)
Length: 150
Type: CDS
Position: Chr05:28839095..28839215 (- strand)
Length: 121
Type: CDS
Position: Chr05:28840563..28840807 (- strand)
Length: 245
Type: CDS
Position: Chr05:28840808..28840908 (- strand)
Length: 101
Type: five_prime_UTR


>Vigan.05G239200.01
ATCCAAACCA ACGGTTTATT TTGCTTTGTT TTCCGGTGAA ATTGAAGAGC GCTCTCTCGG AGAAACTTCA GAAAACCACC
ATTACCATCT CCGTCGCCGC CATGGAAGGA GGTGGAGGAA CGTTATCGGA GATTCACCAA TCCGCAAAGA AACTTCTGCT
TAGGTCTCGT GACGGTCTTG AACGTCTCGA ACGCCTCGAG TACTCTGCCA CCGCCGGCAC CGGCGCCGAA ACGGAGCTTT
CGTTCGCTGT GAAGAAGGAC ATCACACAGA TCCAATCCCT CTGCGTGGAG ATGGAGCGCC TCTGGCGATC CGTCACAGCA
AAACCTCAAC GCGATCTCTG GAAAAGAAAA GTGGAACAAA TAGCTGAGGA GGCTGAATCA CTAAGAGCAA GTTTGGATAA
ATATAACTTA CGGCATCAGA AACGGATGAG AGAAGCTAAT GAGAGAGCAG AACTGTTGGG ACGAGCTAAT GGGGATTCTG
CTCATGTTCT GAGAATTTTT GATGAGGAGG CACAAGCATT ACATTCAGTC CGCGCTTCTG CCCGGGAACT AGAAAATGCA
AATGCAATTG GGGAAGCCAT CCTTTCTTCA ATACATGGTC AAAGAGAACG CTTGAAGAGT GCACATAGAA AAGCATTGGA
CATCCTCAAT ACAGTTGGGA TATCTAACTC CGTTTTGAGG CTAATTGAGA GAAGAAACCG TGTCGACCAA TGGATCAAAT
ATGCAGGAAT GCTATTGACT GTCATTTTCT TGTTCGCATT TGTTTACTGG AGACATTGAC CATTCTCAGA TGTTGAAAAT
CTGGAAATTT GTTTGGGAGA GCATATAAAA GTGAGATACG AAGTATATTT GGCAGAAATA AGCGAAACTT CAACAGCTTG
TGTGTCACGA GGTAATAGAC ACGAGGCTTA AATCTTGTAA CTTCTTACAC CATAGTCTTT GACAATATAT TTTAGCCTAC
TTTAGATGTA CAGTTTCATC TTAGAACAGT TCCATCTTAG ATTTCTATTC CCAAACTTGA TGAATTTACT GTCACTTCCT
ATGCCGAATC CCTCTAAAAA ATATTCTACT TATATGGTTA CTTCAAAGTA AAATGTCCAT CGGTACTTTT CAGATAAGTG
AACATGGAAC TTTTTTCTTT CTTTATTTGT AA

>Vigan.05G239200.01
ATGGAAGGAG GTGGAGGAAC GTTATCGGAG ATTCACCAAT CCGCAAAGAA ACTTCTGCTT AGGTCTCGTG ACGGTCTTGA
ACGTCTCGAA CGCCTCGAGT ACTCTGCCAC CGCCGGCACC GGCGCCGAAA CGGAGCTTTC GTTCGCTGTG AAGAAGGACA
TCACACAGAT CCAATCCCTC TGCGTGGAGA TGGAGCGCCT CTGGCGATCC GTCACAGCAA AACCTCAACG CGATCTCTGG
AAAAGAAAAG TGGAACAAAT AGCTGAGGAG GCTGAATCAC TAAGAGCAAG TTTGGATAAA TATAACTTAC GGCATCAGAA
ACGGATGAGA GAAGCTAATG AGAGAGCAGA ACTGTTGGGA CGAGCTAATG GGGATTCTGC TCATGTTCTG AGAATTTTTG
ATGAGGAGGC ACAAGCATTA CATTCAGTCC GCGCTTCTGC CCGGGAACTA GAAAATGCAA ATGCAATTGG GGAAGCCATC
CTTTCTTCAA TACATGGTCA AAGAGAACGC TTGAAGAGTG CACATAGAAA AGCATTGGAC ATCCTCAATA CAGTTGGGAT
ATCTAACTCC GTTTTGAGGC TAATTGAGAG AAGAAACCGT GTCGACCAAT GGATCAAATA TGCAGGAATG CTATTGACTG
TCATTTTCTT GTTCGCATTT GTTTACTGGA GACATTGA

>Vigan.05G239200.01
MEGGGGTLSE IHQSAKKLLL RSRDGLERLE RLEYSATAGT GAETELSFAV KKDITQIQSL CVEMERLWRS VTAKPQRDLW
KRKVEQIAEE AESLRASLDK YNLRHQKRMR EANERAELLG RANGDSAHVL RIFDEEAQAL HSVRASAREL ENANAIGEAI
LSSIHGQRER LKSAHRKALD ILNTVGISNS VLRLIERRNR VDQWIKYAGM LLTVIFLFAF VYWRH*