GBrowse Details

Vigan.05G245900.01

Basic Information:
Name: Vigan.05G245900.01
Multiple alignment
Variant Information
Position: Chr05:30286964..30288595 (- strand)
Length: 1632
Functional Information:
Description: Similar to Uncharacterized protein. [C6SVD7, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Glutathione S-transferase, N-terminal (IPR004045)
Glutathione S-transferase, C-terminal (IPR004046)
Glutathione S-transferase, C-terminal-like (IPR010987)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:167.69,66.21,86.25,101.48,1091.22,381.22,168.79,143.69
Arabidopsis thaliana homolog: AT2G30860.1
Automatic updates:
Name: KM818399 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phi class glutathione S-transferase (GSTF5) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: KM818405 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phi class glutathione S-transferase (GSTF13) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: KY399363 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula putative phi class glutathione transferase GSTF7 mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001250907 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499911 (LOC100499911), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001252713 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glutathione S-transferase GST 22 (GSTF5), mRNA.
PubMed ID: 11080288 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:30286964..30287183 (- strand)
Length: 220
Type: three_prime_UTR
Position: Chr05:30287184..30287638 (- strand)
Length: 455
Type: CDS
Position: Chr05:30288155..30288203 (- strand)
Length: 49
Type: CDS
Position: Chr05:30288328..30288546 (- strand)
Length: 219
Type: CDS
Position: Chr05:30288547..30288595 (- strand)
Length: 49
Type: five_prime_UTR


>Vigan.05G245900.01
CAATTTACTA AACAATTCAA AAGTAATGAC TTTGGAGCTA TCCTCATGAA TGGACAGCAT AAAAGCACAA CTTGACAGAA
AAACACATTC AAAGCACAGA GAAAGAGAAA AAATTGAGAG AAAAATGGTG GTGAAGGTGT ATGGTCCAAC TTATGCATCC
CCAAAAAGGG TGGTTGTGTG TCTGATTGAG AAGGAAATCG AGTTTGAAGC AGTGCATGTC GATCTCTTCA AGGGAGAGAA
TAAGGAACCC GAGTTCCTTA AGTTGCAGCC ATTTGGATCA CTTCCTGTTA TTCAAGATGG TGATTATACT CTCTATGAAT
CTCGTGCAAT AATCAGATAC TTTGCAGAGA AGTATAAAGA CCAAGGAACT GACTTGTTGG GAAAGACAAT AGAAGAAAAG
GGTCTTGTGG AACAATGGCT TGAAGTGGAA GCTCATAACT TTCACCCACC ACTCTACAAT TTGGTTATCA ATGTTCTATT
TGCCCCATTA ATGGGAGTTG CCTCAGACCA AAAAGTGATA GAAGAGAGTG ATAAAAAGCT TGAGAAGGTG CTTGATGTTT
ATGAGGAGAG GCTCTCAAAA AGCAAGTATT TGGCTGGTGA TTTCTTCAGC CTTGCTGATC TTAGCCATCT CCCATTTGGT
CATTATTTGG TGAACCAAAC TGGAAGAGGG AATTTGGTGA GAGAGAGGAA GCATGTGAGT GCTTGGTGGG ATGATATCAG
CAACAGACCA TCTTGGAAGA AGGTTCTTCA GTTATACAAA TACCCTGTCT AGATGCTTAA TTAGCCCTAT TCCTATATCC
ATGATGGTTG AGGGATGAGC CTTCAGTGTT TTCTAATACC TGCTTGAGAA TAAAATTGAG GCTATCTTCA ACATGTGGAC
CTGTTACTTG TTTTTGGATT TGGATCTTTT CCTCTGCTTA AATAAAAGTT ATATCTTATA AGCTCAGATC TTGTCACAAA
TGCAATAATT ACCTTGAGTA TGTTTCAAGT TA

>Vigan.05G245900.01
ATGGACAGCA TAAAAGCACA ACTTGACAGA AAAACACATT CAAAGCACAG AGAAAGAGAA AAAATTGAGA GAAAAATGGT
GGTGAAGGTG TATGGTCCAA CTTATGCATC CCCAAAAAGG GTGGTTGTGT GTCTGATTGA GAAGGAAATC GAGTTTGAAG
CAGTGCATGT CGATCTCTTC AAGGGAGAGA ATAAGGAACC CGAGTTCCTT AAGTTGCAGC CATTTGGATC ACTTCCTGTT
ATTCAAGATG GTGATTATAC TCTCTATGAA TCTCGTGCAA TAATCAGATA CTTTGCAGAG AAGTATAAAG ACCAAGGAAC
TGACTTGTTG GGAAAGACAA TAGAAGAAAA GGGTCTTGTG GAACAATGGC TTGAAGTGGA AGCTCATAAC TTTCACCCAC
CACTCTACAA TTTGGTTATC AATGTTCTAT TTGCCCCATT AATGGGAGTT GCCTCAGACC AAAAAGTGAT AGAAGAGAGT
GATAAAAAGC TTGAGAAGGT GCTTGATGTT TATGAGGAGA GGCTCTCAAA AAGCAAGTAT TTGGCTGGTG ATTTCTTCAG
CCTTGCTGAT CTTAGCCATC TCCCATTTGG TCATTATTTG GTGAACCAAA CTGGAAGAGG GAATTTGGTG AGAGAGAGGA
AGCATGTGAG TGCTTGGTGG GATGATATCA GCAACAGACC ATCTTGGAAG AAGGTTCTTC AGTTATACAA ATACCCTGTC
TAG

>Vigan.05G245900.01
MDSIKAQLDR KTHSKHRERE KIERKMVVKV YGPTYASPKR VVVCLIEKEI EFEAVHVDLF KGENKEPEFL KLQPFGSLPV
IQDGDYTLYE SRAIIRYFAE KYKDQGTDLL GKTIEEKGLV EQWLEVEAHN FHPPLYNLVI NVLFAPLMGV ASDQKVIEES
DKKLEKVLDV YEERLSKSKY LAGDFFSLAD LSHLPFGHYL VNQTGRGNLV RERKHVSAWW DDISNRPSWK KVLQLYKYPV
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