GBrowse Details

Vigan.05G248000.01

Basic Information:
Name: Vigan.05G248000.01
Multiple alignment
Variant Information
Position: Chr05:30811587..30814098 (+ strand)
Length: 2512
Functional Information:
Description: Similar to 60S ribosomal protein L18a. [C6SZ28, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: 60S ribosomal protein L18a/ L20 (IPR021138)
Ribosomal protein L18a/LX (IPR023573)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.10,9.74,19.53,8.78,25.42,29.07,25.08,13.33
Automatic updates:
Name: NM_001250750 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306365 (LOC100306365), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:30811587..30811820 (+ strand)
Length: 234
Type: five_prime_UTR
Position: Chr05:30811821..30811969 (+ strand)
Length: 149
Type: CDS
Position: Chr05:30812436..30812499 (+ strand)
Length: 64
Type: CDS
Position: Chr05:30813365..30813706 (+ strand)
Length: 342
Type: CDS
Position: Chr05:30813707..30814098 (+ strand)
Length: 392
Type: three_prime_UTR


>Vigan.05G248000.01
TGTTAATGCA CAGAAAAAAT ACCTGCAACT GAGACAACAC TAAGCAGTTG CAACCATGGT CACCTTCAGG GTAATCATAT
CATGGATTTT TCACCATTTT CCTATCTTCT AACTTTTGCA ACCGTTCTAT ATTCTTTCAA TTCCTTGCAA AATGGGACTT
TTTCTGATTG TTTACTAAAA TTCATATTTT GAACTAGTTT TTGTTTTCTA GTTGATTTCG TTTTTTCTAG TTGGATGACA
CTTTTTTTTT TGGTATTATT GAATCAGTTT CACCAATACC AAGTTGTGGG AAGAGCTCTT CCCACTGAAA CTGATGTGCA
TCCCAAGATC TACAGGATGA AACTCTGGGC CACCAATGAG GTCCGTGCTA AATCTAAGTT CTGGTATTTC TTGAGAAAAC
TAAAGAAGGT CAAGAAAAGC AACGGGCAAA TGCTAGCCAT CAATGAGATT TTTGAGAAAA ATCCTACCAA GATCAAGAAC
TATGGAATTT GGCTGCGATA TCAGAGCCGA ACCGGTTATC ACAACATGTA CAAGGAATAC AGAGATACTA CTCTGAACGG
TGCTGTTGAA CAAATGTACA ACGAAATGGC ATCTCGTCAT AGAGTCAGGT CTCCATGCAT CCAGATTATT AAGACTGCCA
CCATCCCAGC TAAGCTTTGC AAAAGGGAGA GCACCAAGCA ATTCCTCAAC TCCAAAATCA AGTTCCCTTT GGTGTTCAAG
AAGGTGAGGC CCCCAACTAG GAAGCTCAAA ACAACATACA AGGCATCCAA GCCCAACCTG TTCATGTAAT TCTCACTCTG
CCACATTTCC TAGTTGTCAT CTTGAGGCTG CTTGATTCAT TAGAAACATT AAGAGAGCAT AGACAAGGTA ATCACATAGG
AACAACTTCA TTTCATCCTA CCACAGATTG CTTGTGTTCT TATTTTTGAT TATTTTTGTT GAGCCCTTCT TTTGCTCATT
TCCATGAATC TGATCAGGAT TGGTTCAAAT CAAGTGTTTC AATTTTGTTA TGAATGCTGG TTTTTCATTT CTTATTTAAT
TTTTACATTC TGGTGACTGA GAAGGAGTAT TCTAAAACAT ATGATGAGCA ATGAGAAGTG AAAAGTTTCA TTCAAATCAC
AAGGAATGCC TATTGTTTTT CTTTTTACCT TGTCAAGTAA TATCCATTAA ATGGTTTGCA G

>Vigan.05G248000.01
ATGACACTTT TTTTTTTGGT ATTATTGAAT CAGTTTCACC AATACCAAGT TGTGGGAAGA GCTCTTCCCA CTGAAACTGA
TGTGCATCCC AAGATCTACA GGATGAAACT CTGGGCCACC AATGAGGTCC GTGCTAAATC TAAGTTCTGG TATTTCTTGA
GAAAACTAAA GAAGGTCAAG AAAAGCAACG GGCAAATGCT AGCCATCAAT GAGATTTTTG AGAAAAATCC TACCAAGATC
AAGAACTATG GAATTTGGCT GCGATATCAG AGCCGAACCG GTTATCACAA CATGTACAAG GAATACAGAG ATACTACTCT
GAACGGTGCT GTTGAACAAA TGTACAACGA AATGGCATCT CGTCATAGAG TCAGGTCTCC ATGCATCCAG ATTATTAAGA
CTGCCACCAT CCCAGCTAAG CTTTGCAAAA GGGAGAGCAC CAAGCAATTC CTCAACTCCA AAATCAAGTT CCCTTTGGTG
TTCAAGAAGG TGAGGCCCCC AACTAGGAAG CTCAAAACAA CATACAAGGC ATCCAAGCCC AACCTGTTCA TGTAA

>Vigan.05G248000.01
MTLFFLVLLN QFHQYQVVGR ALPTETDVHP KIYRMKLWAT NEVRAKSKFW YFLRKLKKVK KSNGQMLAIN EIFEKNPTKI
KNYGIWLRYQ SRTGYHNMYK EYRDTTLNGA VEQMYNEMAS RHRVRSPCIQ IIKTATIPAK LCKRESTKQF LNSKIKFPLV
FKKVRPPTRK LKTTYKASKP NLFM*