GBrowse Details

Vigan.05G252200.01

Basic Information:
Name: Vigan.05G252200.01
Multiple alignment
Variant Information
Position: Chr05:31962103..31965861 (- strand)
Length: 3759
Functional Information:
Description: Similar to protein LHCP TRANSLOCATION DEFECT-like. [XP_004493199.1, Cicer arietinum]
InterPro: Ankyrin repeat-containing domain (IPR020683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.49,1.29,14.46,113.22,3.23,13.15,2.95,15.05
Arabidopsis thaliana homolog: AT1G50900.1
Automatic updates:
Name: NM_001251389 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499940 (LOC100499940), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:31962103..31962242 (- strand)
Length: 140
Type: three_prime_UTR
Position: Chr05:31962243..31962497 (- strand)
Length: 255
Type: CDS
Position: Chr05:31965403..31965678 (- strand)
Length: 276
Type: CDS
Position: Chr05:31965679..31965861 (- strand)
Length: 183
Type: five_prime_UTR


>Vigan.05G252200.01
ATTCTTTTAG TCACTAATAA AATAAATAAA GTTGTAGGGT GAAGAGAGAA AAGTAGGGGT GTAAGAAAAA AATCTGCATA
GTTGGTGGAT AGCATCTATG AGACAGTGTG TGGATAGCAA CACACAATAC AAAAGAAGTG AAACTTTCAC TACAGAAGCT
TGCTGTTTCA AAACTCAACA GCAATGGCTT CTATCTCATG CATCACCCAC CACCCCGCCA CTTCCAAGCT AAAAACTTTC
TCCCCTTCAC CTCACGCTTA TGCCTCAAAC TTGGCTTCCA GGTTTCTGGG CACAAAAAAA AGTGTTGGGT GGCTCAGCCT
CACCTCTAGT ATTGGCCCCT CCAACGGCTC CAGAGCCACG TGCTGGTTCA GGTTCGGGAA GAACGGTGTT GATGCCGAAG
GTGCTGGCAT TTATGGCAGC CAGAGCCGTG ATGACTTCGA TAGAGATGAT GTGGAGCAGT ACTTCAACTA CATGGGGATG
CTAGCAGTAG ATGGAACCTA TGATAAAATG GAAGCCCTTC TAAGCCTAAA CATCCACCCT GTGGACATCC TTCTCCTATT
AGCTGCATCA GAAGGTGACA AGCCAAAAAT TGAAGAACTC CTGAGAGCTG GAGCAAAATA TGATGTAAAA GATAGAGAGG
GTAGGACCGC ATTGGACCGA GCCAACGAAG AAATTAAAGA ATTCATTCTT AATTTTTCAG TGCAAAGGGC ATGATTTGTT
TGTTTCCACC ATAAGCATGC CTATTCAGCT ACATAGTTGC TAACATTTTG ATAACTTTTG AACTCTGTTA GTTTATATGC
TTTGGATTAA TCATCAGAAT GGATTTGAAT ACCCATAAAA CCAAGAGTTC TTCG

>Vigan.05G252200.01
ATGGCTTCTA TCTCATGCAT CACCCACCAC CCCGCCACTT CCAAGCTAAA AACTTTCTCC CCTTCACCTC ACGCTTATGC
CTCAAACTTG GCTTCCAGGT TTCTGGGCAC AAAAAAAAGT GTTGGGTGGC TCAGCCTCAC CTCTAGTATT GGCCCCTCCA
ACGGCTCCAG AGCCACGTGC TGGTTCAGGT TCGGGAAGAA CGGTGTTGAT GCCGAAGGTG CTGGCATTTA TGGCAGCCAG
AGCCGTGATG ACTTCGATAG AGATGATGTG GAGCAGTACT TCAACTACAT GGGGATGCTA GCAGTAGATG GAACCTATGA
TAAAATGGAA GCCCTTCTAA GCCTAAACAT CCACCCTGTG GACATCCTTC TCCTATTAGC TGCATCAGAA GGTGACAAGC
CAAAAATTGA AGAACTCCTG AGAGCTGGAG CAAAATATGA TGTAAAAGAT AGAGAGGGTA GGACCGCATT GGACCGAGCC
AACGAAGAAA TTAAAGAATT CATTCTTAAT TTTTCAGTGC AAAGGGCATG A

>Vigan.05G252200.01
MASISCITHH PATSKLKTFS PSPHAYASNL ASRFLGTKKS VGWLSLTSSI GPSNGSRATC WFRFGKNGVD AEGAGIYGSQ
SRDDFDRDDV EQYFNYMGML AVDGTYDKME ALLSLNIHPV DILLLLAASE GDKPKIEELL RAGAKYDVKD REGRTALDRA
NEEIKEFILN FSVQRA*