VIGGS:GBrowse

Vigan.05G254400.01

Basic Information:

Name:	Vigan.05G254400.01 Multiple alignment Variant Information
Position:	Chr05:32234869..32238099 (+ strand)
Length:	3231

Functional Information:

Description:	Similar to Pollen Ole e 1 allergen and extensin family protein. [XP_007020913.1, Theobroma cacao]
InterPro:	Pollen Ole e 1 allergen/extensin (IPR006041)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:75.74,67.11,27.63,30.16,34.97,109.26,63.68,44.99
Arabidopsis thaliana homolog:	AT5G54855.1

Automatic updates:

Name:	KM397724 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max pollen Ole e 1 allergen and extensin family protein mRNA, partial cds.
PubMed ID:	25249442 NCBI(pubmed)
Status:	Known Variant

Name:	KM397734 NCBI(nuccore)
Organism:	Medicago truncatula
Description:	Medicago truncatula pollen Ole e 1 allergen and extensin family protein mRNA, partial cds.
PubMed ID:	25249442 NCBI(pubmed)
Status:	Known Variant

Name:	KM397742 NCBI(nuccore)
Organism:	Phaseolus vulgaris
Description:	Phaseolus vulgaris pollen Ole e 1 allergen and extensin family protein mRNA, partial cds.
PubMed ID:	25249442 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001248520 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527393 (LOC100527393), mRNA.
PubMed ID:	28294342 NCBI(pubmed)
PubMed ID:	25249442 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001250485 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305581 (LOC100305581), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:32234869..32235048 (+ strand)
Length:	180
Type:	five_prime_UTR

Position:	Chr05:32235049..32235193 (+ strand)
Length:	145
Type:	CDS

Position:	Chr05:32237407..32237690 (+ strand)
Length:	284
Type:	CDS

Position:	Chr05:32237691..32238099 (+ strand)
Length:	409
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G254400.01
ATTTTACATA ATGACAATTT AGTCCCTACT CGGGCGTTGG ACTTATTCAT TCAGTATTTC AACTATTGTG TCGGTGGAAA
TATCAATGCA GTGTTCGAGT TGAAAGAAAA CTACCCGTAA ACCCAAAGGC ATTTCTCCGA GAAAGGTGTC ATTTTTTTGC
TGTTTCTCTC TATCTCAATC ATGGAAAAAC AGAAGACGGT GATGGGTTTG ATTCTTTTGC TTTTTGTTTC GGGTGTGAGT
GCTTGGACTG GTGAAATTCA CGGAAGAGTT GTTTGTGATG TTTGTGGAGA TTCTTCTCTT GGACCTGAAG ATCATGTGGT
TGAAGGTGCT GAGGTTGCTG TTCTTTGCAT CACCAGGTCT GGAGAAGTTC TAAACTATCA GGCATTCACA GATGCAAAGG
GGATATACAC AGTGGCCGAG ACAATGCCGG AGAGTGATCG TTGGGACGCA TGTCTAGCTC GACCAATCAG TAGTTTCCAT
GAACAGTGCA CTCAACTTGG TGAGGGCAGC TTGGGAGTCA AATTCAGTTA CAATCACCCA TCAGGATATT CACACAATGT
CAGGACCTTT GTGTATCGAC CCACCAGTGT TCCAACTTAC TGCATATGAT ATATATGGTC TTGCTCCGAA TCTGTGAGTG
CTTATGCTTT GGTTGAACTA GTTCAAAACT AATGAGCATA TGAACATATT CTCTTTATAC TATACATGTA GGTGAAGTGG
TGTTCCAGGT ATGTGTTTCT TTAGAAACTA GACATAGTAA GCTTGAGACG TTTGAGTAAT TGTAAATGAT AATATTATAG
AGAGCAAAGC AAAATCATAG TAAATGGCAC TGTCATTGAA CAGTGCAATG AATCTCATGG CTTAAATGCA TTATTATACT
TTAACTACCA AAGTTTCACA AAGTTGATAT AACTGGTTTG TGTAAACATG ATGAAAAGAC AAGGGTTTGG ATCCCTTCAC
TTTACGTATG AAGAAGATTT TGTTGAATGT GGTAAAATTC CTCTATTTCA TATGAGAA

[show][hide][copy]CDS

>Vigan.05G254400.01
ATGGAAAAAC AGAAGACGGT GATGGGTTTG ATTCTTTTGC TTTTTGTTTC GGGTGTGAGT GCTTGGACTG GTGAAATTCA
CGGAAGAGTT GTTTGTGATG TTTGTGGAGA TTCTTCTCTT GGACCTGAAG ATCATGTGGT TGAAGGTGCT GAGGTTGCTG
TTCTTTGCAT CACCAGGTCT GGAGAAGTTC TAAACTATCA GGCATTCACA GATGCAAAGG GGATATACAC AGTGGCCGAG
ACAATGCCGG AGAGTGATCG TTGGGACGCA TGTCTAGCTC GACCAATCAG TAGTTTCCAT GAACAGTGCA CTCAACTTGG
TGAGGGCAGC TTGGGAGTCA AATTCAGTTA CAATCACCCA TCAGGATATT CACACAATGT CAGGACCTTT GTGTATCGAC
CCACCAGTGT TCCAACTTAC TGCATATGA

[show][hide][copy]PROTEIN

>Vigan.05G254400.01
MEKQKTVMGL ILLLFVSGVS AWTGEIHGRV VCDVCGDSSL GPEDHVVEGA EVAVLCITRS GEVLNYQAFT DAKGIYTVAE
TMPESDRWDA CLARPISSFH EQCTQLGEGS LGVKFSYNHP SGYSHNVRTF VYRPTSVPTY CI*