VIGGS:GBrowse

Vigan.05G255000.01

Basic Information:

Name:	Vigan.05G255000.01 Multiple alignment Variant Information
Position:	Chr05:32288400..32292901 (- strand)
Length:	4502

Functional Information:

Description:	Similar to Uncharacterized protein. [G0T427, Glycine max]
GO:	Molecular Function: acid phosphatase activity (GO:0003993)
	Molecular Function: hydrolase activity (GO:0016787)
	Molecular Function: metal ion binding (GO:0046872)
InterPro:	Phosphoesterase domain (IPR004843)
	Purple acid phosphatase-like, N-terminal (IPR008963)
	Purple acid phosphatase, N-terminal (IPR015914)
	Iron/zinc purple acid phosphatase-like C-terminal domain (IPR025733)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.46,1.33,8.41,3.19,29.15,35.28,27.36,20.76
Arabidopsis thaliana homolog:	AT3G20500.1

Automatic updates:

Name:	NM_001252701 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max purple acid phosphatase 18-like (PHYTASE), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:32288400..32288774 (- strand)
Length:	375
Type:	three_prime_UTR

Position:	Chr05:32288775..32288994 (- strand)
Length:	220
Type:	CDS

Position:	Chr05:32289163..32289251 (- strand)
Length:	89
Type:	CDS

Position:	Chr05:32289326..32289514 (- strand)
Length:	189
Type:	CDS

Position:	Chr05:32290602..32291270 (- strand)
Length:	669
Type:	CDS

Position:	Chr05:32292595..32292726 (- strand)
Length:	132
Type:	CDS

Position:	Chr05:32292727..32292901 (- strand)
Length:	175
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G255000.01
TCGAGTGAAT ATTATAAACT AATCAGTCAC ACAGTGACAA AACAAAAAGT GGTGCACTAT TGCCAAAATC CACGGACTTG
AATCCCGGCG TGGTGAACAG TGATGATAGA TTCCAGAAGT ACATTGTCAT CGTGCTGATC CAACGTTATT GACAGAGGTT
TGTGTTGACA CACAAATGGA ACTGAAACTA CTCCTAACGG TTTTATTGAT TCGGTCTGCA ACTGTTGCGG CTGATTACAT
TCGACCTCCG CCTCGAAAAG CTTTGCATCT TCCATGGCAT TCTCAACCCT CCTCTTATCC TCAACAGGTA CACATTTCTT
TAGCAGGAGA CCAGCACATG AGAGTTACTT GGATTACTGA TGATAATTCT GCACCTTCAA TTGTAGAATA TGGAACACTG
CCAGGGCAAT ATGGCTCTGT AGCTGAAGGA GAGACCACCT CGTACAGTTA TGTGTTCTAT AACTCAGGAA AGATACACCA
TGCCGTTATT GGTCCTTTAG AACATGATTC TGTGTACTAT TATAGATGTG GTGGACAAGG TGCCGAGTTC CAGCTCAGAA
CTCCTCCAGC TCAACTTCCA ATCACTTTTG CTGTGGCTGG GGATTTGGGT CAAACTGAAT GGACTAAATC AACATTGGAT
CACATTGACC AATGTAAGTA TAATGTTCAC CTACTTCCAG GAGACCTAGC ATATGCTGAT TACATCCAGC ATCGATGGGA
CTCCTTTGGT AGGCTAGTGC AGCCACTTGC TAGTGCAAGA CCATGGATGG TAACACAAGG GAACCATGAA GTAGAAAGCA
TACCTTTGTT AAAGGATGGG TTTGTGTCCT ATAATTCCAG ATGGAAAATG CCATTTAAGG AAAGCGGATC AAATTCAAAT
CTCTTTTATT CATTTGAAGT TGCAGGTGCT CACATTATCA TGCTTGGGTC CTATACAGAT TATGATGAAT ACTCTGAACA
ATATAGATGG CTTAAGGAAA ATCTTTCAAA GGTGGATAGG AAAAGGACAC CTTGGTTGCT TGTGTTATTT CATGTGCCGT
GGTATAATAG TAACACTGCT CATCAAGGTG AAGGCGCTGA TATGATGGCA GCTATGGAGC CATTACTTAA TGCTGCTAGC
GTCGATTTAG TTCTTGCTGG TCATGTGCAT GCTTATGAAC GCTCGAAACG TGTATACAAT GGAAGAGTTG ACCCTTGTGG
TTCAGTCCAT ATAACCATTG GTGATGGAGG AAACAAAGAA GGCTTAGCTC ATAGATATAT AAATCCACAG CCAATATGGT
CAGAATTCCG TGAAGCCAGT TTTGGTCACG GCGAGCTAAA GATTGTAAAC TCTACCCATG CTTTCTGGAG TTGGCACAGG
AATGACGATG ATGAGCCGGT AAAATCTGAC GATATCTGGA TAACCTCTTT GATCAGCTCA GGATGTGTTG ATCAGAAGAG
AAATGAACTC AGGAATAAAC TTATGACTCC TTAAAATCCC CTGGTCTTGT TATTCCTCAA CAACAGATTA GCAAGAGTTT
GGTCTTGAAT GCAAATCATG AAGCAATGCC TCATATTAGT ACTGGCACAG TAGCAACTTG ATTGGTTTGA CCTTGTTTAT
TCGAGGGAGT GAGTAAACTG TGATATTTCA GTTCTTGTCT TTACATCTTT CCCTGTATTT AGTCTAAGTA CATATTCTAT
TGTCTTTACA TCTTTCCCTG TATTGCTTGC ATTTTCTATT GTATTTACTA TAAAATACAT GGTTTATAAT TACATATAAA
AATAGCTTGG GCTTTTTTCA CTCTATCTGT AGCACAATGC TGGTGTTTGT TATGGGAAAA TATAAAACTT TTAATATTTT
GGATCATGA

[show][hide][copy]CDS

>Vigan.05G255000.01
ATGGAACTGA AACTACTCCT AACGGTTTTA TTGATTCGGT CTGCAACTGT TGCGGCTGAT TACATTCGAC CTCCGCCTCG
AAAAGCTTTG CATCTTCCAT GGCATTCTCA ACCCTCCTCT TATCCTCAAC AGGTACACAT TTCTTTAGCA GGAGACCAGC
ACATGAGAGT TACTTGGATT ACTGATGATA ATTCTGCACC TTCAATTGTA GAATATGGAA CACTGCCAGG GCAATATGGC
TCTGTAGCTG AAGGAGAGAC CACCTCGTAC AGTTATGTGT TCTATAACTC AGGAAAGATA CACCATGCCG TTATTGGTCC
TTTAGAACAT GATTCTGTGT ACTATTATAG ATGTGGTGGA CAAGGTGCCG AGTTCCAGCT CAGAACTCCT CCAGCTCAAC
TTCCAATCAC TTTTGCTGTG GCTGGGGATT TGGGTCAAAC TGAATGGACT AAATCAACAT TGGATCACAT TGACCAATGT
AAGTATAATG TTCACCTACT TCCAGGAGAC CTAGCATATG CTGATTACAT CCAGCATCGA TGGGACTCCT TTGGTAGGCT
AGTGCAGCCA CTTGCTAGTG CAAGACCATG GATGGTAACA CAAGGGAACC ATGAAGTAGA AAGCATACCT TTGTTAAAGG
ATGGGTTTGT GTCCTATAAT TCCAGATGGA AAATGCCATT TAAGGAAAGC GGATCAAATT CAAATCTCTT TTATTCATTT
GAAGTTGCAG GTGCTCACAT TATCATGCTT GGGTCCTATA CAGATTATGA TGAATACTCT GAACAATATA GATGGCTTAA
GGAAAATCTT TCAAAGGTGG ATAGGAAAAG GACACCTTGG TTGCTTGTGT TATTTCATGT GCCGTGGTAT AATAGTAACA
CTGCTCATCA AGGTGAAGGC GCTGATATGA TGGCAGCTAT GGAGCCATTA CTTAATGCTG CTAGCGTCGA TTTAGTTCTT
GCTGGTCATG TGCATGCTTA TGAACGCTCG AAACGTGTAT ACAATGGAAG AGTTGACCCT TGTGGTTCAG TCCATATAAC
CATTGGTGAT GGAGGAAACA AAGAAGGCTT AGCTCATAGA TATATAAATC CACAGCCAAT ATGGTCAGAA TTCCGTGAAG
CCAGTTTTGG TCACGGCGAG CTAAAGATTG TAAACTCTAC CCATGCTTTC TGGAGTTGGC ACAGGAATGA CGATGATGAG
CCGGTAAAAT CTGACGATAT CTGGATAACC TCTTTGATCA GCTCAGGATG TGTTGATCAG AAGAGAAATG AACTCAGGAA
TAAACTTATG ACTCCTTAA

[show][hide][copy]PROTEIN

>Vigan.05G255000.01
MELKLLLTVL LIRSATVAAD YIRPPPRKAL HLPWHSQPSS YPQQVHISLA GDQHMRVTWI TDDNSAPSIV EYGTLPGQYG
SVAEGETTSY SYVFYNSGKI HHAVIGPLEH DSVYYYRCGG QGAEFQLRTP PAQLPITFAV AGDLGQTEWT KSTLDHIDQC
KYNVHLLPGD LAYADYIQHR WDSFGRLVQP LASARPWMVT QGNHEVESIP LLKDGFVSYN SRWKMPFKES GSNSNLFYSF
EVAGAHIIML GSYTDYDEYS EQYRWLKENL SKVDRKRTPW LLVLFHVPWY NSNTAHQGEG ADMMAAMEPL LNAASVDLVL
AGHVHAYERS KRVYNGRVDP CGSVHITIGD GGNKEGLAHR YINPQPIWSE FREASFGHGE LKIVNSTHAF WSWHRNDDDE
PVKSDDIWIT SLISSGCVDQ KRNELRNKLM TP*