VIGGS:GBrowse

Vigan.05G260500.01

Basic Information:

Name:	Vigan.05G260500.01 Multiple alignment Variant Information
Position:	Chr05:33228016..33232444 (- strand)
Length:	4429

Functional Information:

Description:	Similar to Uncharacterized protein. [K7MR25, Glycine max]
GO:	Biological Process: transport (GO:0006810)
	Cellular Component: membrane (GO:0016020)
	Cellular Component: integral to membrane (GO:0016021)
	Molecular Function: transporter activity (GO:0005215)
InterPro:	Drug/metabolite transporter (IPR000620)
	Triose phosphate/phosphoenolpyruvate translocator (IPR004696)
	Triose-phosphate transporter domain (IPR004853)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:11.75,10.77,36.61,20.31,139.15,28.96,121.57,64.61
Arabidopsis thaliana homolog:	AT1G61800.1, AT5G54800.1

Automatic updates:

Name:	NM_001251614 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max glucose-6-phosphate/phosphate translocator 1, chloroplastic (LOC732659), mRNA; nuclear gene for chloroplast product.
PubMed ID:	16101913 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:33228016..33228571 (- strand)
Length:	556
Type:	three_prime_UTR

Position:	Chr05:33228572..33228583 (- strand)
Length:	12
Type:	CDS

Position:	Chr05:33229355..33229568 (- strand)
Length:	214
Type:	CDS

Position:	Chr05:33230386..33230608 (- strand)
Length:	223
Type:	CDS

Position:	Chr05:33230986..33231211 (- strand)
Length:	226
Type:	CDS

Position:	Chr05:33231623..33232129 (- strand)
Length:	507
Type:	CDS

Position:	Chr05:33232130..33232444 (- strand)
Length:	315
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G260500.01
GTAAGATTCC AAGGAATCAT TCCCTTTCCT TTTGTTTTTC TTCTATGCTT TTGAGTTTTG TCTTGAATTT TCTGTTAAAA
ATCTTTTTTT TTATATTGTA ATTATTATTA TTCTTGTTAT TATTGTTTTG CAGTGTTTTG GTTTGACATA AGTTAGCCTT
TCAAGATCTC AGAGGGGCAG AAGATCAAAG CCTGGACACA CTCTCATAGA TAAAGAGTGT CTCTGATTTG ATCTTTGTTT
CTTTTCTCCT TGAAAATTTT CAGCACCCCA CAGGGTTCTG TCAGAAAAGT TTGAATTTTG AGCCTGCCCT TTACAATGAT
TTCTTCCTTG AGACAGCCTG TTGTGGGGAT CAGTGGTTCT GATCTTCTTT TGAGGCAAAG ACATGCAACC CCGGTTAAGG
CACGGTCGTT TTTGCCTTGT TTGGCAAGGG AAAAGGGACA GGGATCTCTG GTTTCGGTGC ATAAGCCACT GCACATTGCT
TCTTCTCTTG GTGGTCGAAA TTTTTCTTCA GTGAAGAGTG GTGGAAAGGG TGATTTGGTG AAGTGTGAGG CCTATGAGGC
AGACAGATCA GAGGTTGAGG CTACAAACAC ACCATCAGAG GCTTCAAAGA AGGTGAAGAT TGGCATATAT TTTGCAACCT
GGTGGGCTCT GAATGTGGTG TTTAATATTT ATAACAAGAA GGTGTTGAAT GCCTACCCCT TCCCGTGGCT GACTTCAACT
CTCTCACTTG CATGTGGGTC TCTCATGATG TTGATCTCTT GGGCCACTGG GATTGCAGAA GCCCCCAAGA CTGATCCTGA
GTTTTGGAAG TCTTTGTTCC CTGTTGCCGT TGCACATACA ATAGGACATG TGGCAGCAAC TGTTAGTATG TCAAAAGTTG
CGGTATCATT TACACATATA ATCAAGAGTG GTGAGCCTGC TTTTAGTGTT CTGGTTTCAA GATTTCTCTT GGGTGAGACT
TTCCCCGTGC CAGTCTATCT GTCTTTACTT CCGATCATTG GTGGATGTGC ACTTGCAGCC GTGACTGAAC TCAATTTCAA
CATGATTGGT TTCATGGGTG CTATGATATC GAATTTGGCA TTTGTATTCC GTAATATCTT TTCAAAAAAG GGAATGAAGG
GAAAGTCTGT CAGTGGAATG AATTACTATG CTTGTTTATC TATTTTGTCC CTTGCAATTC TCACACCCTT TGCAATTGCC
GTGGAAGGAC CACAGATGTG GATTGCGGGA TGGAAAACAT CGATCTCTCA GATTGGAAAC CAACTCATAT GGTGGGTAGC
AGCTCAAAGT GTATTCTATC ACTTATACAA TCAAGTGTCA TACATGTCTC TAGATGAGAT CTCTCCCTTG ACATTTAGCA
TTGGAAACAC CATGAAACGT ATATCTGTCA TAGTGTCTTC GATTATTATC TTCCACACTC CAGTTCAACC TGTTAATGCT
CTTGGTGCCG CTATTGCTAT CCTTGGAACC TTCTTATATT CACAGGCAAA ACAATAGATT TGGTGGACTA AGATTCCTCT
ATGGATTTGT TTGTTACCGT TCTTCATGCT CAACCAGGGG CAAGAAAGTT AAATTTGGAA TGTGTCACTG CTGGATTTTT
GCAAGACTAG GATGCTCTGG CTGTCAGTCC ATCTGTAGAT AGATATAATA ATAAGGATGA TGCTGCTGAG GAAACATTAT
TATAATACAG ATTATTGTTA TTATTAGGTA GAGTTTTTTT TTTTTTTTCA ATTTCTGACA TGCCTACGAT TTGAAATAAA
TGTTTTTGAG AATAATCTCT CAAAACATTG TTTTCTGTAA GGAGCATGCA ATAATGTGAT GAATCCCATG ATGAATTTGA
GTGTCAGAAT ATATAAATGT TTGATGTTGT GAGTGAATAT GGTCCTTCCA TTTCTATGCC CTTTGACCCT TTCCATGTGA
TGGTTGTTTG CTTTCTGTAG TGAGAAAGTG ACTCTTCACT TTTCTAAAGG ACATGTTCTC ATTCTTCATG TCTATGTTCA
TCGTTGATAT TTGAAACCTA ATTCATAGAA TAATTAATCA GAGAATATTC GAG

[show][hide][copy]CDS

>Vigan.05G260500.01
ATGATTTCTT CCTTGAGACA GCCTGTTGTG GGGATCAGTG GTTCTGATCT TCTTTTGAGG CAAAGACATG CAACCCCGGT
TAAGGCACGG TCGTTTTTGC CTTGTTTGGC AAGGGAAAAG GGACAGGGAT CTCTGGTTTC GGTGCATAAG CCACTGCACA
TTGCTTCTTC TCTTGGTGGT CGAAATTTTT CTTCAGTGAA GAGTGGTGGA AAGGGTGATT TGGTGAAGTG TGAGGCCTAT
GAGGCAGACA GATCAGAGGT TGAGGCTACA AACACACCAT CAGAGGCTTC AAAGAAGGTG AAGATTGGCA TATATTTTGC
AACCTGGTGG GCTCTGAATG TGGTGTTTAA TATTTATAAC AAGAAGGTGT TGAATGCCTA CCCCTTCCCG TGGCTGACTT
CAACTCTCTC ACTTGCATGT GGGTCTCTCA TGATGTTGAT CTCTTGGGCC ACTGGGATTG CAGAAGCCCC CAAGACTGAT
CCTGAGTTTT GGAAGTCTTT GTTCCCTGTT GCCGTTGCAC ATACAATAGG ACATGTGGCA GCAACTGTTA GTATGTCAAA
AGTTGCGGTA TCATTTACAC ATATAATCAA GAGTGGTGAG CCTGCTTTTA GTGTTCTGGT TTCAAGATTT CTCTTGGGTG
AGACTTTCCC CGTGCCAGTC TATCTGTCTT TACTTCCGAT CATTGGTGGA TGTGCACTTG CAGCCGTGAC TGAACTCAAT
TTCAACATGA TTGGTTTCAT GGGTGCTATG ATATCGAATT TGGCATTTGT ATTCCGTAAT ATCTTTTCAA AAAAGGGAAT
GAAGGGAAAG TCTGTCAGTG GAATGAATTA CTATGCTTGT TTATCTATTT TGTCCCTTGC AATTCTCACA CCCTTTGCAA
TTGCCGTGGA AGGACCACAG ATGTGGATTG CGGGATGGAA AACATCGATC TCTCAGATTG GAAACCAACT CATATGGTGG
GTAGCAGCTC AAAGTGTATT CTATCACTTA TACAATCAAG TGTCATACAT GTCTCTAGAT GAGATCTCTC CCTTGACATT
TAGCATTGGA AACACCATGA AACGTATATC TGTCATAGTG TCTTCGATTA TTATCTTCCA CACTCCAGTT CAACCTGTTA
ATGCTCTTGG TGCCGCTATT GCTATCCTTG GAACCTTCTT ATATTCACAG GCAAAACAAT AG

[show][hide][copy]PROTEIN

>Vigan.05G260500.01
MISSLRQPVV GISGSDLLLR QRHATPVKAR SFLPCLAREK GQGSLVSVHK PLHIASSLGG RNFSSVKSGG KGDLVKCEAY
EADRSEVEAT NTPSEASKKV KIGIYFATWW ALNVVFNIYN KKVLNAYPFP WLTSTLSLAC GSLMMLISWA TGIAEAPKTD
PEFWKSLFPV AVAHTIGHVA ATVSMSKVAV SFTHIIKSGE PAFSVLVSRF LLGETFPVPV YLSLLPIIGG CALAAVTELN
FNMIGFMGAM ISNLAFVFRN IFSKKGMKGK SVSGMNYYAC LSILSLAILT PFAIAVEGPQ MWIAGWKTSI SQIGNQLIWW
VAAQSVFYHL YNQVSYMSLD EISPLTFSIG NTMKRISVIV SSIIIFHTPV QPVNALGAAI AILGTFLYSQ AKQ*