GBrowse Details

Vigan.05G261700.01

Basic Information:
Name: Vigan.05G261700.01
Multiple alignment
Variant Information
Position: Chr05:33499659..33501401 (+ strand)
Length: 1743
Functional Information:
Description: Similar to Uncharacterized protein. [I1KY22, Glycine max]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,1.42,23.19,21.78,0.00,1.57,0.05,21.14
Arabidopsis thaliana homolog: AT2G42840.1
Automatic updates:
Name: NM_001253313 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100810866 (LOC100810866), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:33499659..33499739 (+ strand)
Length: 81
Type: five_prime_UTR
Position: Chr05:33499740..33499911 (+ strand)
Length: 172
Type: CDS
Position: Chr05:33500116..33500401 (+ strand)
Length: 286
Type: CDS
Position: Chr05:33500885..33501215 (+ strand)
Length: 331
Type: CDS
Position: Chr05:33501216..33501401 (+ strand)
Length: 186
Type: three_prime_UTR


>Vigan.05G261700.01
CTTCTTCAAA CCACTTCAAA ATCCTCACCA TTCTCTCTCT ATTATACATA TCTCTTGTGT TCTAAGCAGC TAGAAGCAAC
AATGGAGAGG AAAAGAAGCC ATACCTCTCT TACCATGCTT GCAATGCTTG TTGGATTACT CTCTCAGAGC CTTGTCATTC
CTGTGATGTC CATAACTGTT GAAGATCAGA AGAACTACTA CACCCCAGAT CCACATGCTG GAAATCCCCC CTCAGGTTTC
TCTGATTCTC TGTGCTCACA CAGGAGTCCT CCATCTCATG GCCATGGAAG CTCTCCACCA TCACATGGTG GAGGAAACTG
TGGATCATCA CCCCCACATC ATGATCCAAC ACCCTCAACT CCATCAACCC CATCAACCCC ATCCACACCA TCAAACCCTC
CTTCAGGTGG ATACTATGGA GGTAGCCCCC CAACACCTAT CACAGTGAGC CCACCAACCA CCCCAGTAGA CCCTGGCACC
CCCTCTATCC CCTCACCACC TTACATTCCT TCCCCATCTC CCTTCACTGG CACATGCAAC TACTGGAGGA ATCACCCAGC
AATCATATGG GGAATCCTAG GGTGGTGGGG AACCCTAGGA AGTGCATTTG GTGTGACCAG TGTTTCAGGG TTCAGTCCTG
GTCTGAGCTT GCCACAAGCA CTTTCCAACA CCAGAACCGA TGGTCTAGGA GCACTCTACA GAGAAGGCAC AGCTTCATTC
CTCAACTCCA TGGTGAACAC CAAGTTCCCT TACACAACCA ACCAAGTCAG AGAGAGATTT GTGGCCTCAC TCAGTTCTAA
CAAAGCTGCA CAAGCACAAG CTCAGCTCTT CAAGTTGGCC AATGAAGGAA GAATGAAGCC TAGACCATAG ATTCATCATT
TAGTCTTAGT TTTATTTCGT GTGTCAATTT ACTGTGTGAA TTTAAAGCAT TTATGTTTCA TATTTCTGTT AGTTTCTGTC
ATTCAAGCCT CTCACATGCG TTATTAATAT GTCTTTAGAT GGATATCATG TTTTTTTTCT TCCAGATTTA ATGCAAACTT
TCTGGTATTG GTTGAA

>Vigan.05G261700.01
ATGGAGAGGA AAAGAAGCCA TACCTCTCTT ACCATGCTTG CAATGCTTGT TGGATTACTC TCTCAGAGCC TTGTCATTCC
TGTGATGTCC ATAACTGTTG AAGATCAGAA GAACTACTAC ACCCCAGATC CACATGCTGG AAATCCCCCC TCAGGTTTCT
CTGATTCTCT GTGCTCACAC AGGAGTCCTC CATCTCATGG CCATGGAAGC TCTCCACCAT CACATGGTGG AGGAAACTGT
GGATCATCAC CCCCACATCA TGATCCAACA CCCTCAACTC CATCAACCCC ATCAACCCCA TCCACACCAT CAAACCCTCC
TTCAGGTGGA TACTATGGAG GTAGCCCCCC AACACCTATC ACAGTGAGCC CACCAACCAC CCCAGTAGAC CCTGGCACCC
CCTCTATCCC CTCACCACCT TACATTCCTT CCCCATCTCC CTTCACTGGC ACATGCAACT ACTGGAGGAA TCACCCAGCA
ATCATATGGG GAATCCTAGG GTGGTGGGGA ACCCTAGGAA GTGCATTTGG TGTGACCAGT GTTTCAGGGT TCAGTCCTGG
TCTGAGCTTG CCACAAGCAC TTTCCAACAC CAGAACCGAT GGTCTAGGAG CACTCTACAG AGAAGGCACA GCTTCATTCC
TCAACTCCAT GGTGAACACC AAGTTCCCTT ACACAACCAA CCAAGTCAGA GAGAGATTTG TGGCCTCACT CAGTTCTAAC
AAAGCTGCAC AAGCACAAGC TCAGCTCTTC AAGTTGGCCA ATGAAGGAAG AATGAAGCCT AGACCATAG

>Vigan.05G261700.01
MERKRSHTSL TMLAMLVGLL SQSLVIPVMS ITVEDQKNYY TPDPHAGNPP SGFSDSLCSH RSPPSHGHGS SPPSHGGGNC
GSSPPHHDPT PSTPSTPSTP STPSNPPSGG YYGGSPPTPI TVSPPTTPVD PGTPSIPSPP YIPSPSPFTG TCNYWRNHPA
IIWGILGWWG TLGSAFGVTS VSGFSPGLSL PQALSNTRTD GLGALYREGT ASFLNSMVNT KFPYTTNQVR ERFVASLSSN
KAAQAQAQLF KLANEGRMKP RP*