GBrowse Details

Vigan.05G262000.01

Basic Information:
Name: Vigan.05G262000.01
Multiple alignment
Variant Information
Position: Chr05:33620292..33624824 (+ strand)
Length: 4533
Functional Information:
Description: Similar to Uncharacterized protein. [I1K3S2, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Biological Process: response to heat (GO:0009408)
Cellular Component: nucleus (GO:0005634)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Heat shock factor (HSF)-type, DNA-binding (IPR000232)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Heat shock transcription factor, plant (IPR027709)
Heat shock transcription factor family (IPR027725)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.83,23.78,6.49,8.35,8.63,3.41,7.39,4.50
Arabidopsis thaliana homolog: AT4G13980.1
Automatic updates:
Name: NM_001353426 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heat stress transcription factor 9 (HSF-09), mRNA.
PubMed ID: 25416131 NCBI(pubmed)
Status: Known Variant
Name: NM_001353430 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heat stress transcription factor 15 (HSF-15), mRNA.
PubMed ID: 25416131 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:33620292..33620474 (+ strand)
Length: 183
Type: five_prime_UTR
Position: Chr05:33620475..33620714 (+ strand)
Length: 240
Type: CDS
Position: Chr05:33623311..33624525 (+ strand)
Length: 1215
Type: CDS
Position: Chr05:33624526..33624824 (+ strand)
Length: 299
Type: three_prime_UTR


>Vigan.05G262000.01
GGTGGGGGTA ACAAGTTCCA ACAACCTTCA ACAGCCTATG GTAGAGACGG CGTTGAAGTC AAACAAACCC TTCTCTCTTA
CAAATTCCAG GTCTTCTTTC TTTTTCCCTT ACCTTCTACT CATTATATAT ACACATTTCT CTCTCTTTTG CATAAGTTCT
AGAAAGATCC ATTCCAATCC CAAATGGACG GTGCGCCACC ATCCGCCGCC GCAGCAGCAG CAGCAGCAGC AGGAGGACCG
GCGCCGTTTC TTCTGAAGAC CTACGACATG GTTGACGATC CCTCCACCAA CGACATCGTT TCGTGGAGCT CATGCAACAC
CAGCTTCGTC GTGTGGAATC CGCCGGAGTT CGCTCGCCTT CTTCTCCCCA CCTATTTCAA GCACAACAAC TTTTCCAGCT
TCATCCGCCA GCTCAATACC TACGGTTTTC GAAAAATACA CCCAGAGCGC TGGGAATTTG CAAATGATGA GTTTGTGAAA
GATCAGAAGC ATCTCCTTAA GAATATACAT CGCAGGAAAC CTATCCACAG TCATAGTCAT CCTCCGGGTT CTATTGTAGA
TCCAGAGAGA GCAGCATTTG AGGAGGAAAT TGAGAAACTT TCCCGCGAGA AAACTTCTCT TGAATCCAAT ATTCATAACT
TCAAACAACA TCAGTCAACA GCAAAGCTTC AACTAGAAGA TTTTCTGCAG CGGTTAGACA CTACTGAAAA GAGGCAGAAG
CAATTGCTGA ACTTCTTTGA GAAGGCTCTT CAGAATCCTA GTTTTGTTGA ACATCTTTCA CGCAAAATTG AATCCATGGA
TTTATCTGCG TATAATAAGA AGAGGCGATT GCCTCAAGCT GATCATGTTC AACCAGTTGC AGAAAGCAGC TTCGTGGACA
GTCACAGCAA TTTTAGAATG GAATTTGGAA ATATTTTCCA CCAGGATTTC TCGAATAAAC TCAGACTGGA ATTGTCACCT
GCCGTGTCAG ATATGAACTT GGTATCACGT AGCACACAGA GTTCAAATGA AGATGGGGAA AGTCCACAGA AAAAACTATC
TGAAGTAGAA CCAAAAGGAG TGCAGACAAG AACATCTCTT ACATTTGCAC CTGAAACATT AGAACTTGCG GATACGGGGG
CTTCTTTTAC TTTTAAGATG GATGCATGTT TGCCGCGAAA AGCAACAACT GCTGAGAACT CAAAACTGAT CTCTTTGGAG
CCAAGTAGTG AAGAAGGCGA TAGTTGCCAG TTAAATTTAA CCCTGGCATC TTGTCCAGTG CAAGTAAACA GAAATTCATA
CTCAGCCAGA TCACCCCAAA TCGACTGTCA AGAAATTGGA AAATTGGCAG AATCGAGATT TTTTGCAAGT GTAAAAGAAT
CTGAAAGTGG TGTTTCCTCA AACCAAAATC TAGCTGCTGA GGCCGCCAAT TTAGCTTCAC CACAGGAGGC TCCAAGTAAC
AACCAAGTTA ATCCAGCTCC TCCGGACAGG GTGAATGATG TTTTCTGGGA ACAGTTTCTT ACCGAAAGGC CAGGCTGTTC
TGACAATGAA GAGGCAATAT CCAACTACCG AGCAAACCCA TATGATGAGC AAGACGAAGG ACGGTCAGTT CATGGAATAT
CTAAAAACAT TAAGAACATG GATCAACTCA CACTTTGAGT TCATCATGCC GTCTAGGACA ACAGTTATAT TATTGTTATA
TGAAATTTTC ATGAATGATA TACAACATTT TTCAAAATTT ACTGCTGACG ACAAATTGTG TCGCATAGGG CTGAAACTAT
ACTTTCTGGC TTGCTACCTG ATGGATACAA ATGTTAATTA ACTATTTGGC TGTGTTGTAT ATTTTCAAGT CATGATTAGC
TTTCAAACGT ACAACTGCAA ACTCAGCTCT TGATTTTTGA GCTTTTCTTG GTTGAGTAGA TCGAGTTTCA TTACCTGATG
GAAAGTTATG ATAGAAA

>Vigan.05G262000.01
ATGGACGGTG CGCCACCATC CGCCGCCGCA GCAGCAGCAG CAGCAGCAGG AGGACCGGCG CCGTTTCTTC TGAAGACCTA
CGACATGGTT GACGATCCCT CCACCAACGA CATCGTTTCG TGGAGCTCAT GCAACACCAG CTTCGTCGTG TGGAATCCGC
CGGAGTTCGC TCGCCTTCTT CTCCCCACCT ATTTCAAGCA CAACAACTTT TCCAGCTTCA TCCGCCAGCT CAATACCTAC
GGTTTTCGAA AAATACACCC AGAGCGCTGG GAATTTGCAA ATGATGAGTT TGTGAAAGAT CAGAAGCATC TCCTTAAGAA
TATACATCGC AGGAAACCTA TCCACAGTCA TAGTCATCCT CCGGGTTCTA TTGTAGATCC AGAGAGAGCA GCATTTGAGG
AGGAAATTGA GAAACTTTCC CGCGAGAAAA CTTCTCTTGA ATCCAATATT CATAACTTCA AACAACATCA GTCAACAGCA
AAGCTTCAAC TAGAAGATTT TCTGCAGCGG TTAGACACTA CTGAAAAGAG GCAGAAGCAA TTGCTGAACT TCTTTGAGAA
GGCTCTTCAG AATCCTAGTT TTGTTGAACA TCTTTCACGC AAAATTGAAT CCATGGATTT ATCTGCGTAT AATAAGAAGA
GGCGATTGCC TCAAGCTGAT CATGTTCAAC CAGTTGCAGA AAGCAGCTTC GTGGACAGTC ACAGCAATTT TAGAATGGAA
TTTGGAAATA TTTTCCACCA GGATTTCTCG AATAAACTCA GACTGGAATT GTCACCTGCC GTGTCAGATA TGAACTTGGT
ATCACGTAGC ACACAGAGTT CAAATGAAGA TGGGGAAAGT CCACAGAAAA AACTATCTGA AGTAGAACCA AAAGGAGTGC
AGACAAGAAC ATCTCTTACA TTTGCACCTG AAACATTAGA ACTTGCGGAT ACGGGGGCTT CTTTTACTTT TAAGATGGAT
GCATGTTTGC CGCGAAAAGC AACAACTGCT GAGAACTCAA AACTGATCTC TTTGGAGCCA AGTAGTGAAG AAGGCGATAG
TTGCCAGTTA AATTTAACCC TGGCATCTTG TCCAGTGCAA GTAAACAGAA ATTCATACTC AGCCAGATCA CCCCAAATCG
ACTGTCAAGA AATTGGAAAA TTGGCAGAAT CGAGATTTTT TGCAAGTGTA AAAGAATCTG AAAGTGGTGT TTCCTCAAAC
CAAAATCTAG CTGCTGAGGC CGCCAATTTA GCTTCACCAC AGGAGGCTCC AAGTAACAAC CAAGTTAATC CAGCTCCTCC
GGACAGGGTG AATGATGTTT TCTGGGAACA GTTTCTTACC GAAAGGCCAG GCTGTTCTGA CAATGAAGAG GCAATATCCA
ACTACCGAGC AAACCCATAT GATGAGCAAG ACGAAGGACG GTCAGTTCAT GGAATATCTA AAAACATTAA GAACATGGAT
CAACTCACAC TTTGA

>Vigan.05G262000.01
MDGAPPSAAA AAAAAAGGPA PFLLKTYDMV DDPSTNDIVS WSSCNTSFVV WNPPEFARLL LPTYFKHNNF SSFIRQLNTY
GFRKIHPERW EFANDEFVKD QKHLLKNIHR RKPIHSHSHP PGSIVDPERA AFEEEIEKLS REKTSLESNI HNFKQHQSTA
KLQLEDFLQR LDTTEKRQKQ LLNFFEKALQ NPSFVEHLSR KIESMDLSAY NKKRRLPQAD HVQPVAESSF VDSHSNFRME
FGNIFHQDFS NKLRLELSPA VSDMNLVSRS TQSSNEDGES PQKKLSEVEP KGVQTRTSLT FAPETLELAD TGASFTFKMD
ACLPRKATTA ENSKLISLEP SSEEGDSCQL NLTLASCPVQ VNRNSYSARS PQIDCQEIGK LAESRFFASV KESESGVSSN
QNLAAEAANL ASPQEAPSNN QVNPAPPDRV NDVFWEQFLT ERPGCSDNEE AISNYRANPY DEQDEGRSVH GISKNIKNMD
QLTL*