GBrowse Details

Vigan.05G265100.01

Basic Information:
Name: Vigan.05G265100.01
Multiple alignment
Variant Information
Position: Chr05:34360391..34363281 (+ strand)
Length: 2891
Functional Information:
Description: Similar to Thioredoxin superfamily protein isoform 1. [XP_007014394.1, Theobroma cacao]
InterPro: Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.53,7.74,6.04,4.86,11.64,6.03,10.87,4.92
Arabidopsis thaliana homolog: AT5G57230.1
Automatic updates:
Name: NM_001251738 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305658 (LOC100305658), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:34360391..34360804 (+ strand)
Length: 414
Type: five_prime_UTR
Position: Chr05:34360805..34360860 (+ strand)
Length: 56
Type: CDS
Position: Chr05:34361613..34361732 (+ strand)
Length: 120
Type: CDS
Position: Chr05:34361861..34361939 (+ strand)
Length: 79
Type: CDS
Position: Chr05:34362211..34362297 (+ strand)
Length: 87
Type: CDS
Position: Chr05:34362509..34362571 (+ strand)
Length: 63
Type: CDS
Position: Chr05:34362844..34362921 (+ strand)
Length: 78
Type: CDS
Position: Chr05:34362922..34363281 (+ strand)
Length: 360
Type: three_prime_UTR


>Vigan.05G265100.01
AACATAAAAC AAAAATATAC AAAAACTAAA AGCACCATAT TTTCATCAGG AATTCTATAG TCCAATTCCC TGTTTTGGGT
GGTGGAAAAG TGACGCCAAG TGGGTATAAG AATTTTAATT TCAAATTAAC TCCGAAAATT ATTCATTTAA CTCATGTTTC
TGTATTTCAC TTTGTTTTCT TTCCTTACGC TTTCTTAAAT CTGAGTTTCA CACACTACGT GGAATGCTCT TTAGGTGTTC
GATAAAATGC TTCAACCGAA TCTTTGTAAA TAAGGAGTTG TGGGGATAGT AGAAATTAAA CAAGAAAAGT TTTAGTGAGG
TTGATAGTGC ATTTTCACGA TTTTTGTAGT CTGTCTGTAA CATGTATTTA TTTGCAGGAA CTGGATAGTT TAGCCCCGTT
GCATTCACCG TGTAATGGAC GATCCATCGT TTTTTGATCG GATGATCAGT CATCTCCGTT CAACTTGCAA GTACTATACT
GGTTATCCAA AGGATCTTGG ACCATCCAAG GTTATTCATT TTACATCTGA GCGTGAGTTT GTCACACTTC TTCATGAAGG
TTTTCCTGTG GTTGTTGCAT TTACTATCAG GGGGAATTAC ACTCGACATC TTGACAAAGT ATTGGAAGAA GCTGCTGTTG
AGTTTTATCC TCATGTAAAA TTTATGCGTG TTGAATGTCC GAAATATCCT GGGTTTTGTA TAACTCGGCA AAAGAAGGAG
TATCCATTCA TTGAAATATT TCACAGTCCA ACACAGGCAG ATAAACAGGG AAGGGTGGCT GATCCGAATA TTACTAAGTA
CAGTGTTAAA GTCTTGCCTT TCAACTACGA TTTAAGCGCT TATGGATTTA GAGAATTCTT CAAGCGACAC GGTATGTGGT
CATCAGATTC AAAGTAAGTT CCAGCGGAAG GGTTTTATGT TTCATATGTT GAAGAGCCAC CTGATCATAC TCTCTACCTA
TCATCACAAG TTCACAACTA ATGGAAAATA TTATTTGGTT TAAGTTCTCG TCAGGGGCTT TATTCATTGT TCCTTTGTGT
TGGCATCTTA GTATTTCCAT GTTTATGTTC TCCAACTTCT AGAATAGAAC CTACAAGACG TTTCTCATCA AACCCTATCT
GTTAATTTGT CTATCAACTA CTTGAATCCT AGAGGCTTCT TTGGAAAGCA AGATAAACTG CTTGTCTTAA AAGTTGGATA
TGCGATATAT TCTTTTGTGT TCTATAAATT GAGTGAGAAA TTATTGCAAT GGTGATA

>Vigan.05G265100.01
ATGGACGATC CATCGTTTTT TGATCGGATG ATCAGTCATC TCCGTTCAAC TTGCAAGTAC TATACTGGTT ATCCAAAGGA
TCTTGGACCA TCCAAGGTTA TTCATTTTAC ATCTGAGCGT GAGTTTGTCA CACTTCTTCA TGAAGGTTTT CCTGTGGTTG
TTGCATTTAC TATCAGGGGG AATTACACTC GACATCTTGA CAAAGTATTG GAAGAAGCTG CTGTTGAGTT TTATCCTCAT
GTAAAATTTA TGCGTGTTGA ATGTCCGAAA TATCCTGGGT TTTGTATAAC TCGGCAAAAG AAGGAGTATC CATTCATTGA
AATATTTCAC AGTCCAACAC AGGCAGATAA ACAGGGAAGG GTGGCTGATC CGAATATTAC TAAGTACAGT GTTAAAGTCT
TGCCTTTCAA CTACGATTTA AGCGCTTATG GATTTAGAGA ATTCTTCAAG CGACACGGTA TGTGGTCATC AGATTCAAAG
TAA

>Vigan.05G265100.01
MDDPSFFDRM ISHLRSTCKY YTGYPKDLGP SKVIHFTSER EFVTLLHEGF PVVVAFTIRG NYTRHLDKVL EEAAVEFYPH
VKFMRVECPK YPGFCITRQK KEYPFIEIFH SPTQADKQGR VADPNITKYS VKVLPFNYDL SAYGFREFFK RHGMWSSDSK
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