GBrowse Details

Vigan.05G265600.01

Basic Information:
Name: Vigan.05G265600.01
Multiple alignment
Variant Information
Position: Chr05:34441545..34445999 (+ strand)
Length: 4455
Functional Information:
Description: Similar to Sieve element occlusion o. [E2FKI6, Glycine max]
InterPro: Sieve element occlusion, N-terminal (IPR027942)
Sieve element occlusion, C-terminal (IPR027944)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,0.12,2.88,2.26,0.01,0.64,1.50,21.48
Automatic updates:
Name: NM_001252915 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion j (SEOJ), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Name: NM_001253161 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion p (SEOP), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:34441545..34441648 (+ strand)
Length: 104
Type: five_prime_UTR
Position: Chr05:34441649..34441861 (+ strand)
Length: 213
Type: CDS
Position: Chr05:34442197..34442280 (+ strand)
Length: 84
Type: CDS
Position: Chr05:34442687..34443123 (+ strand)
Length: 437
Type: CDS
Position: Chr05:34443620..34443717 (+ strand)
Length: 98
Type: CDS
Position: Chr05:34443844..34443986 (+ strand)
Length: 143
Type: CDS
Position: Chr05:34444144..34444635 (+ strand)
Length: 492
Type: CDS
Position: Chr05:34445210..34445821 (+ strand)
Length: 612
Type: CDS
Position: Chr05:34445822..34445999 (+ strand)
Length: 178
Type: three_prime_UTR


>Vigan.05G265600.01
CATGCCCTAT GCTTTTCGGT GACTATAAAT CAGCCAACAC AAACGAGAGA AACAGCGTTT ACTTTGAAAC ATTGACTAGT
AGATAGCTAG ATTGGATCAC GAAGATGAAT ACCCAGAAGT CAGGTTCAAG TAGCAATGTC CTGCAAGGGA AGACCTTGCT
GCAGAACCCA TTTGAATTCA GTGATGAACA GATTCTGGAT AATGTCTACA GAACCCATTT TCATTGTGTT GAGAAATGCG
ATGTAAAATC TCTTCACACC GTTGCCTCAA CCGTCATCAA TCACTCAATT CAAATCACAG ACACCGTCAT TCAACAGGCT
AGCCAACTCA GTGAGCGTTT CAGAGAAGAA ACCATAACGT CTCGACAACT TACTGCAAAG CTGAAGCGAA TTGCTTGTCA
GATGGTGTGC ACTTCTCGTG GTGAACACTA CGCGAATCAC ACAACGATGC TGATTCTGGA ACAGCTGAAA GCATATTCAT
GGGATGCGAA GGCACTGATA GTTCAAGCAG CTTTTGCTCT GGAATATGGG AAATTCTTGT ATCATCCCCT GACGAGACAG
CACGAAGAGT CTGAGAAATC TCTGGCTGAT CTGAATGGGC TTCTCGTGAT TCAGCAGAAC ATTCAGCACT TGAGTTTCTT
CAACAGTGTG GTGAAGAAGG TGATGCAAGT GATTGAGTGC ATCACTGAGT GGAAGAGGCT GACCAGTGCT GGCTATGACA
TCAAGGACGT GCCAACCTTG GCAGAGACTT TGCATGAGAT TCCTGTTGTC GTCTACTGGG CAATCTTCAC CTTCGTCACT
TGTACTGGTC AAATTGATGA CTTCACCACT GACCACAAGG TTAACAAACA TGAATTATCG AAAAACTTTG AGAACAAGCT
TGACCTCATT CTGAGAACTT TTAGAGAGCA TTTGGAAATG TGTAGCACGG AGATAGGGAG AATAGAAGAC TATTCCAGAC
GTAAGAATAT TATCATTATT ACTGGAAAAG ATATTGTCAA GGTCTTGAGA GCACTCATCA TCTCCACTGA GAACAGGGAT
TCTAGACATA ATGTTATTAA TGGCCTCACT TTAGAACAGG TTAAAATTGA AGAGTTTAAG AAGAAGCATG TGTTGTTATT
CATTTCTGAG CTTGAACATA TTGATGAGGA GATTCAACTT CTGAAAAGTG TTTACGAGAA ACTGAAAGAG AAACCAAGAG
AAGTAGAAGG TTACAGGAAG GAGGATTTCA AGATTTTGTG GATCCCCATT GTTGATGAAT GGAATGAAGA TCGAAGGAAA
ACATTAGAAA CTAAATTACA AAGAACCAAG TTCGGATGGT ATGTGGTCAA ACATTTCAAT TTTGCAATAG GCATCAAGCT
AATCAAAGAA GTGTTCAACT ATAGTGGGAA ACCTGTGATC CCACTCATAA GTCCTGAGGG TAAGGTGGAA AACATTGACA
CAAAACAAAT TATATCTATG TGGGGCATTG ATGGATTTCC ATTTAGAACC TCCGATCACA CTCGTCTCAC TCAACAATGG
AATTGGTTTT GGTCTGAAAT GACCAAGCTT AACCCAAGAA TCGGAGACTT GATTGAAGAG GATCGTTATC TGTTCATATA
CGGAGGCTCA GACACTGTGT GGATCCAAGA ATTCACGACT GCCATAGAGA AATTGAAGAG GGATGTTGAG ACACTAAGTT
TGCAGATAGA CATCACAGTA GACTCATACC AACTGGGAAG GGAAGACCCT AAGATTGTGC CACGCTTTTG GATTGCCATT
GATAGTTTGC TTGCAAGTAG GAAGCAACAA ATAATGAAGG GTGGAAATCA AGGAGTGCAA GACTTTGCAA CAACAGAGAT
AAAGAGGTTG CTCTTCCTAA AACAAGACCC TAAGGGATGG GTCATTCTTA GTAAGGGATA CAATGTGAAG CTCCTGGGTC
ATGGTCAGGC TATGTCTCGC ACCGTCAAGG ACTTGAGCTT TTGGCATGTA AAGTTGCATG AAGAAGTGAG CTTTGATGTT
GCTTTCAAAG AGTACTATGA GAGCATCAAG GACAAGACTA GTGCAAAAAA ATGTGAACAT AGTGAGATTT CTAACTACCC
TTCTGATATA TTGGCTCATA TACCTTGCCC TAATATAGAA TGTGGACGTT CCATGGAAGT AACTTCTGTT AATTATAGGT
GTTGTCATGG TCTTGATCCA TAGACAATGT TACTCAGCTT GCGAACCCAC CTTTTGGTTT AAATTTCTGT TGTGTGTTTA
TTATTTAGGT TTTAGCTACT TGCTTGTCAA GTAGTAGACA ATATTAATTT TCAGACTGTT TGTAACTTTT CCAGTGAGTT
GGTTTTGAAT GAAATAAAAA ATTTCATTGA AGTGTTGTTT G

>Vigan.05G265600.01
ATGAATACCC AGAAGTCAGG TTCAAGTAGC AATGTCCTGC AAGGGAAGAC CTTGCTGCAG AACCCATTTG AATTCAGTGA
TGAACAGATT CTGGATAATG TCTACAGAAC CCATTTTCAT TGTGTTGAGA AATGCGATGT AAAATCTCTT CACACCGTTG
CCTCAACCGT CATCAATCAC TCAATTCAAA TCACAGACAC CGTCATTCAA CAGGCTAGCC AACTCAGTGA GCGTTTCAGA
GAAGAAACCA TAACGTCTCG ACAACTTACT GCAAAGCTGA AGCGAATTGC TTGTCAGATG GTGTGCACTT CTCGTGGTGA
ACACTACGCG AATCACACAA CGATGCTGAT TCTGGAACAG CTGAAAGCAT ATTCATGGGA TGCGAAGGCA CTGATAGTTC
AAGCAGCTTT TGCTCTGGAA TATGGGAAAT TCTTGTATCA TCCCCTGACG AGACAGCACG AAGAGTCTGA GAAATCTCTG
GCTGATCTGA ATGGGCTTCT CGTGATTCAG CAGAACATTC AGCACTTGAG TTTCTTCAAC AGTGTGGTGA AGAAGGTGAT
GCAAGTGATT GAGTGCATCA CTGAGTGGAA GAGGCTGACC AGTGCTGGCT ATGACATCAA GGACGTGCCA ACCTTGGCAG
AGACTTTGCA TGAGATTCCT GTTGTCGTCT ACTGGGCAAT CTTCACCTTC GTCACTTGTA CTGGTCAAAT TGATGACTTC
ACCACTGACC ACAAGGTTAA CAAACATGAA TTATCGAAAA ACTTTGAGAA CAAGCTTGAC CTCATTCTGA GAACTTTTAG
AGAGCATTTG GAAATGTGTA GCACGGAGAT AGGGAGAATA GAAGACTATT CCAGACGTAA GAATATTATC ATTATTACTG
GAAAAGATAT TGTCAAGGTC TTGAGAGCAC TCATCATCTC CACTGAGAAC AGGGATTCTA GACATAATGT TATTAATGGC
CTCACTTTAG AACAGGTTAA AATTGAAGAG TTTAAGAAGA AGCATGTGTT GTTATTCATT TCTGAGCTTG AACATATTGA
TGAGGAGATT CAACTTCTGA AAAGTGTTTA CGAGAAACTG AAAGAGAAAC CAAGAGAAGT AGAAGGTTAC AGGAAGGAGG
ATTTCAAGAT TTTGTGGATC CCCATTGTTG ATGAATGGAA TGAAGATCGA AGGAAAACAT TAGAAACTAA ATTACAAAGA
ACCAAGTTCG GATGGTATGT GGTCAAACAT TTCAATTTTG CAATAGGCAT CAAGCTAATC AAAGAAGTGT TCAACTATAG
TGGGAAACCT GTGATCCCAC TCATAAGTCC TGAGGGTAAG GTGGAAAACA TTGACACAAA ACAAATTATA TCTATGTGGG
GCATTGATGG ATTTCCATTT AGAACCTCCG ATCACACTCG TCTCACTCAA CAATGGAATT GGTTTTGGTC TGAAATGACC
AAGCTTAACC CAAGAATCGG AGACTTGATT GAAGAGGATC GTTATCTGTT CATATACGGA GGCTCAGACA CTGTGTGGAT
CCAAGAATTC ACGACTGCCA TAGAGAAATT GAAGAGGGAT GTTGAGACAC TAAGTTTGCA GATAGACATC ACAGTAGACT
CATACCAACT GGGAAGGGAA GACCCTAAGA TTGTGCCACG CTTTTGGATT GCCATTGATA GTTTGCTTGC AAGTAGGAAG
CAACAAATAA TGAAGGGTGG AAATCAAGGA GTGCAAGACT TTGCAACAAC AGAGATAAAG AGGTTGCTCT TCCTAAAACA
AGACCCTAAG GGATGGGTCA TTCTTAGTAA GGGATACAAT GTGAAGCTCC TGGGTCATGG TCAGGCTATG TCTCGCACCG
TCAAGGACTT GAGCTTTTGG CATGTAAAGT TGCATGAAGA AGTGAGCTTT GATGTTGCTT TCAAAGAGTA CTATGAGAGC
ATCAAGGACA AGACTAGTGC AAAAAAATGT GAACATAGTG AGATTTCTAA CTACCCTTCT GATATATTGG CTCATATACC
TTGCCCTAAT ATAGAATGTG GACGTTCCAT GGAAGTAACT TCTGTTAATT ATAGGTGTTG TCATGGTCTT GATCCATAG

>Vigan.05G265600.01
MNTQKSGSSS NVLQGKTLLQ NPFEFSDEQI LDNVYRTHFH CVEKCDVKSL HTVASTVINH SIQITDTVIQ QASQLSERFR
EETITSRQLT AKLKRIACQM VCTSRGEHYA NHTTMLILEQ LKAYSWDAKA LIVQAAFALE YGKFLYHPLT RQHEESEKSL
ADLNGLLVIQ QNIQHLSFFN SVVKKVMQVI ECITEWKRLT SAGYDIKDVP TLAETLHEIP VVVYWAIFTF VTCTGQIDDF
TTDHKVNKHE LSKNFENKLD LILRTFREHL EMCSTEIGRI EDYSRRKNII IITGKDIVKV LRALIISTEN RDSRHNVING
LTLEQVKIEE FKKKHVLLFI SELEHIDEEI QLLKSVYEKL KEKPREVEGY RKEDFKILWI PIVDEWNEDR RKTLETKLQR
TKFGWYVVKH FNFAIGIKLI KEVFNYSGKP VIPLISPEGK VENIDTKQII SMWGIDGFPF RTSDHTRLTQ QWNWFWSEMT
KLNPRIGDLI EEDRYLFIYG GSDTVWIQEF TTAIEKLKRD VETLSLQIDI TVDSYQLGRE DPKIVPRFWI AIDSLLASRK
QQIMKGGNQG VQDFATTEIK RLLFLKQDPK GWVILSKGYN VKLLGHGQAM SRTVKDLSFW HVKLHEEVSF DVAFKEYYES
IKDKTSAKKC EHSEISNYPS DILAHIPCPN IECGRSMEVT SVNYRCCHGL DP*