GBrowse Details

Vigan.05G274300.01

Basic Information:
Name: Vigan.05G274300.01
Multiple alignment
Variant Information
Position: Chr05:35909414..35932099 (+ strand)
Length: 22686
Functional Information:
Description: Similar to Homoserine dehydrogenase. [V7BLZ0, Phaseolus vulgaris]
GO: Biological Process: cellular amino acid metabolic process (GO:0006520)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: homoserine dehydrogenase activity (GO:0004412)
InterPro: Homoserine dehydrogenase, catalytic (IPR001342)
NAD(P)-binding domain (IPR016040)
Homoserine dehydrogenase, conserved site (IPR019811)
Homoserine dehydrogenase, short (IPR022697)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.32,8.45,7.50,10.46,15.11,12.09,6.33,9.40
Arabidopsis thaliana homolog: AT5G21060.2
Automatic updates:
Name: NM_001250134 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max homoserine dehydrogenase (LOC732566), mRNA.
PubMed ID: 19897476 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:35909414..35909600 (+ strand)
Length: 187
Type: five_prime_UTR
Position: Chr05:35909601..35909696 (+ strand)
Length: 96
Type: CDS
Position: Chr05:35910004..35910154 (+ strand)
Length: 151
Type: CDS
Position: Chr05:35910240..35910317 (+ strand)
Length: 78
Type: CDS
Position: Chr05:35910780..35910895 (+ strand)
Length: 116
Type: CDS
Position: Chr05:35912059..35912112 (+ strand)
Length: 54
Type: CDS
Position: Chr05:35917490..35917577 (+ strand)
Length: 88
Type: CDS
Position: Chr05:35917690..35917782 (+ strand)
Length: 93
Type: CDS
Position: Chr05:35927587..35927627 (+ strand)
Length: 41
Type: CDS
Position: Chr05:35930988..35931041 (+ strand)
Length: 54
Type: CDS
Position: Chr05:35931156..35931319 (+ strand)
Length: 164
Type: CDS
Position: Chr05:35931492..35931561 (+ strand)
Length: 70
Type: CDS
Position: Chr05:35931758..35931883 (+ strand)
Length: 126
Type: CDS
Position: Chr05:35931884..35932099 (+ strand)
Length: 216
Type: three_prime_UTR


>Vigan.05G274300.01
ATCAGCGTAT GTTGTCCTAT TTGATGACTA ACTTTCCGCC TATGTTGTAT GCTGCAGAAT TGGAATCAGG GGTCATATTT
CACAGTCCCC TCGTACTTAA GCTACTACTT CTTCCATCAT ACACACAACC CTAATTAATT CAACTGACAA CTTTTTTCTA
AAAAAAATTG AAAGATTGAA AGGAAAAATG AAGAATATTC CTCTGATTCT AATGGGTTGT GGAGGAGTTG GTCGTCAACT
TCTCCAACAC ATTGTCTCGT GCCGTTCTCT TCACTCCACA CAGGGACTGT GCTTGAGAGT TGTAGGAGTT GGTGATAGTA
CATCTTTGTT GGTGTCGGAT GATTTGCTGC ATAAGGGGTT GGACGATACC GTTTTGTTAC AACTTTGCCG GGTCAAGAGC
GCTGGCGAAT CTCTATCAAA ACTTTGTGAT TTTGGGGAAG GCCGGGCGTT TGGGCATCCG GAGTCAGAAG GAAAGATTCT
AGAGATTGCA TCTCAACTTG GTAGAAAAAC AGGTTTGGTG CTTGTGGATT GCTCTGCTAG CTTTGACACT GTTGTGGTGC
TAAAGCAAGC AATTCATATG GGTTGTTGTG CTGTTTTGGC AAATAAGAAG CCTCTTACAT CTTCAATGGA GGATTTTAAG
AAACTTTTCA CGTATCCACG TCATATTCGG CATGAGTCAA CCGTAGGAGC TGGTCTTCCT GTAATAGCAT CCTTGAATCG
CATAATCTGT TCTGGTGATC CTGTTCATCA AATTATTGGT AGTTTGAGTG GGACATTGGG GTATGTAATG AGTGAGGTTG
AAGATGGAAA GCCACTCAGC CAAGTTGTTA AAGATGCTAA AAGTCTGGGG TATACTGAAC CAGATCCACG TGATGACCTT
GGTGGAATGG ATGTTGCTAG AAAGGCTTTA ATTCTTGCTC GAATACTTGG CCATCAAATT AATCTAGATA GCATTCAGAT
TGAGAGTTTG TATCCCAAAG AAATGGGACC TGATATAATG ACTGTTGAAG ACTTCTTGGA CCGAGGACTC TCGTTGCTAG
ATAAAGATAT TCAAGCTAGA GTTGAGAAGG CAGCTTCAAA TGGAAATGTT CTGCGCTATG TCTGTGTGAT CGAGGGTTCA
AGGTGTGAAG TTGGTATTCA GGAGCTACCA AAAAATTCTC CCTTGGGAAG ACTAAGGGGA AGTGATAACG TGTTGGAAAT
ATACACTCGA TGCTATAGTA AACAACCACT GGTTATTCAA GGTGCTGGAG CCGGAAATGA CACCACTGCT GCGGGTGTTC
TTGCTGATAT CGTGGATCTT CAAGATTTAT TTTCTTGAAA GGAAAAATTT TTCTATTCTG ATTAGAGAAA GTAGAAGGTA
TAACTGCTAC TGATTTGCCC TGGAAAACTG CTGCAAATGT GGGTTCATAA TGCTGAACCA TATACAGATG AAATTGAGTT
TGCATTTTCT TTGTCTTAAA AGGAAAAGTA TCATGACTAT TGGAGAATTT TGATTATTAG TTTGAATAAC ACAATACTAA
TTCAAAGATG GCAA

>Vigan.05G274300.01
ATGAAGAATA TTCCTCTGAT TCTAATGGGT TGTGGAGGAG TTGGTCGTCA ACTTCTCCAA CACATTGTCT CGTGCCGTTC
TCTTCACTCC ACACAGGGAC TGTGCTTGAG AGTTGTAGGA GTTGGTGATA GTACATCTTT GTTGGTGTCG GATGATTTGC
TGCATAAGGG GTTGGACGAT ACCGTTTTGT TACAACTTTG CCGGGTCAAG AGCGCTGGCG AATCTCTATC AAAACTTTGT
GATTTTGGGG AAGGCCGGGC GTTTGGGCAT CCGGAGTCAG AAGGAAAGAT TCTAGAGATT GCATCTCAAC TTGGTAGAAA
AACAGGTTTG GTGCTTGTGG ATTGCTCTGC TAGCTTTGAC ACTGTTGTGG TGCTAAAGCA AGCAATTCAT ATGGGTTGTT
GTGCTGTTTT GGCAAATAAG AAGCCTCTTA CATCTTCAAT GGAGGATTTT AAGAAACTTT TCACGTATCC ACGTCATATT
CGGCATGAGT CAACCGTAGG AGCTGGTCTT CCTGTAATAG CATCCTTGAA TCGCATAATC TGTTCTGGTG ATCCTGTTCA
TCAAATTATT GGTAGTTTGA GTGGGACATT GGGGTATGTA ATGAGTGAGG TTGAAGATGG AAAGCCACTC AGCCAAGTTG
TTAAAGATGC TAAAAGTCTG GGGTATACTG AACCAGATCC ACGTGATGAC CTTGGTGGAA TGGATGTTGC TAGAAAGGCT
TTAATTCTTG CTCGAATACT TGGCCATCAA ATTAATCTAG ATAGCATTCA GATTGAGAGT TTGTATCCCA AAGAAATGGG
ACCTGATATA ATGACTGTTG AAGACTTCTT GGACCGAGGA CTCTCGTTGC TAGATAAAGA TATTCAAGCT AGAGTTGAGA
AGGCAGCTTC AAATGGAAAT GTTCTGCGCT ATGTCTGTGT GATCGAGGGT TCAAGGTGTG AAGTTGGTAT TCAGGAGCTA
CCAAAAAATT CTCCCTTGGG AAGACTAAGG GGAAGTGATA ACGTGTTGGA AATATACACT CGATGCTATA GTAAACAACC
ACTGGTTATT CAAGGTGCTG GAGCCGGAAA TGACACCACT GCTGCGGGTG TTCTTGCTGA TATCGTGGAT CTTCAAGATT
TATTTTCTTG A

>Vigan.05G274300.01
MKNIPLILMG CGGVGRQLLQ HIVSCRSLHS TQGLCLRVVG VGDSTSLLVS DDLLHKGLDD TVLLQLCRVK SAGESLSKLC
DFGEGRAFGH PESEGKILEI ASQLGRKTGL VLVDCSASFD TVVVLKQAIH MGCCAVLANK KPLTSSMEDF KKLFTYPRHI
RHESTVGAGL PVIASLNRII CSGDPVHQII GSLSGTLGYV MSEVEDGKPL SQVVKDAKSL GYTEPDPRDD LGGMDVARKA
LILARILGHQ INLDSIQIES LYPKEMGPDI MTVEDFLDRG LSLLDKDIQA RVEKAASNGN VLRYVCVIEG SRCEVGIQEL
PKNSPLGRLR GSDNVLEIYT RCYSKQPLVI QGAGAGNDTT AAGVLADIVD LQDLFS*