GBrowse Details

Vigan.06G001400.01

Basic Information:
Name: Vigan.06G001400.01
Multiple alignment
Variant Information
Position: Chr06:142992..161670 (+ strand)
Length: 18679
Functional Information:
Description: Similar to queuine tRNA-ribosyltransferase subunit qtrtd1-like. [XP_004516911.1, Cicer arietinum]
GO: Biological Process: tRNA modification (GO:0006400)
Biological Process: queuosine biosynthetic process (GO:0008616)
Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479)
InterPro: tRNA-guanine(15) transglycosylase-like (IPR002616)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.67,8.93,7.48,11.71,6.66,4.06,5.92,4.51
Automatic updates:
Name: NM_001253977 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max queuine tRNA-ribosyltransferase subunit qtrtd1-like (LOC100778880), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:142992..143150 (+ strand)
Length: 159
Type: five_prime_UTR
Position: Chr06:143151..143350 (+ strand)
Length: 200
Type: CDS
Position: Chr06:143424..143598 (+ strand)
Length: 175
Type: CDS
Position: Chr06:143721..143879 (+ strand)
Length: 159
Type: CDS
Position: Chr06:145128..145221 (+ strand)
Length: 94
Type: CDS
Position: Chr06:153629..153699 (+ strand)
Length: 71
Type: CDS
Position: Chr06:154649..154700 (+ strand)
Length: 52
Type: CDS
Position: Chr06:155111..155159 (+ strand)
Length: 49
Type: CDS
Position: Chr06:155262..155396 (+ strand)
Length: 135
Type: CDS
Position: Chr06:161028..161147 (+ strand)
Length: 120
Type: CDS
Position: Chr06:161235..161370 (+ strand)
Length: 136
Type: CDS
Position: Chr06:161371..161670 (+ strand)
Length: 300
Type: three_prime_UTR


>Vigan.06G001400.01
AAACTCCAAG TTCAAAATTC GAAACTCCAA GTTCAAAATT CGAAACTCCA AATTCAAAAT TTTAAACCCT AAGTCTAAAT
CGAAATATAA ACTTTAAATC CAAAACTCTA AAACCAAGTC AATTTTCGTA TCTCGGCGCG ACTCGACTGC AACAGGCAAA
TGAAGTTTGT GGTAAAGAAG GCATATTGCA GTGGGGGGCG GATAGGAGCA CTAGAGTTGG GAAGCTGCCC AAAACCCATA
GAGACCCCCG CTCTTCTCCT ATCCACTCGC AAAGGACTTC CACATTTTAT CGCCCCTGAC CTACTCACTT CTCTCCCTTT
TCCGGATTCC CATCTCCTTC AAATTTCCCC ACTCCACTTT TTGGAAGGTC TTGCTTCAAC CACAATATCA AAAATAGGAG
GCCTTCACCA GATGCTTAGC TTGCACCAAT ATGGAATTGC GGCAGTAGCC AGGGATTCCA TCCAATGCCT TCCCGAGTCT
AAGGGAGCTA CCAAACTCGG ACCATCTTTT GAGACTCCTT GTGGTCGTCT ATCGATTAAC TCCAAAGATT ATGTTGAAAT
GATTTCATGC ATGAGGCCAA ATATATGGGC CACTTTGGCT GATGAGGTAC CTGCTTGGGT GTCTGAAAAA AGGAACAAAA
CCTCAGTAGA TAGAACCGTG CGATGGCTCG ACGATTGCCT TGCATTAAAT CCGGCAGCTG GGTCAGTCTT TGGTGCGGTT
GTTGGAGGCC CAAATTTTGA TGAAAGGATG CGGTGTGCAA TGGAGGTAGC CAAGCGAAAT GTATCAGGTT ATTGGATTGG
AGGATTTGGT CTAGGAGAGA GGATTGAAGA GCGACCTGCT CTTCTAAGTG CCATTATAGA TGTCTTGCCA GATGAAAAGC
CACGCATGAT CAGTGGGCTT GGGCTCCCAG AGGAAATCTT GGAAGGAATT GATGCTGGGA TTGATCTTTT TGATTCAACG
TACGTATATT GCCTTACACT TGGAGGATTT GCACTCACGT TTTCGCTAGA CAACGGTGGA AATCAATATG ATTTTCAGAG
ATGCCAGGTT GAAAGGGACT TGACTAAAAT CAATTTGAGA GCAAAAGTTT ATAGCAAAGA TATGTCCCCC ATTTTAGGAA
ACTGCACCTG CTATACATGC CGGAATCATA CTAAAGCATA CATCAATCAC TTATTTAATG TTCATGAAAT GCTGGCACAG
ACTCTGCTAG AAATCCATAA TACACACCAC TACCTGATGT TCTTCCGTGT AATAAGGGAA GCAATAAAGG ATGGAAGATT
TAAGAAATTT CGAATGACAT TCATTGAGAG CAGGCGTGTG CATCAGGAAA CGAAAGCTGA TTGTGCTTGA GGTCCAATAA
GTTTAGGTAT ATCTGACTGG GTTTTAGCTT AGATTTGATA TACCTTTGAA ACATGAACTA AATATTATAT ACATAAGGAC
ATCAGTTTTT GTAGTGTAAA CTGGTTTTTT TGGCTGTCAT TAGATACAAT TTATTTGATT GCAGAATGTG TCTTTGATTA
TTACTTTTGT AATTAATGAT GCTAACATTA CCTCTTTTGT TGTTTTGAAA GGTGCATTTA ATGCTCTTTA ATGCATGTTC
ACAACAACTA TAAACTTTTC AATTTTTTTA TCATTCAAAC AATATTTGAG 

>Vigan.06G001400.01
ATGAAGTTTG TGGTAAAGAA GGCATATTGC AGTGGGGGGC GGATAGGAGC ACTAGAGTTG GGAAGCTGCC CAAAACCCAT
AGAGACCCCC GCTCTTCTCC TATCCACTCG CAAAGGACTT CCACATTTTA TCGCCCCTGA CCTACTCACT TCTCTCCCTT
TTCCGGATTC CCATCTCCTT CAAATTTCCC CACTCCACTT TTTGGAAGGT CTTGCTTCAA CCACAATATC AAAAATAGGA
GGCCTTCACC AGATGCTTAG CTTGCACCAA TATGGAATTG CGGCAGTAGC CAGGGATTCC ATCCAATGCC TTCCCGAGTC
TAAGGGAGCT ACCAAACTCG GACCATCTTT TGAGACTCCT TGTGGTCGTC TATCGATTAA CTCCAAAGAT TATGTTGAAA
TGATTTCATG CATGAGGCCA AATATATGGG CCACTTTGGC TGATGAGGTA CCTGCTTGGG TGTCTGAAAA AAGGAACAAA
ACCTCAGTAG ATAGAACCGT GCGATGGCTC GACGATTGCC TTGCATTAAA TCCGGCAGCT GGGTCAGTCT TTGGTGCGGT
TGTTGGAGGC CCAAATTTTG ATGAAAGGAT GCGGTGTGCA ATGGAGGTAG CCAAGCGAAA TGTATCAGGT TATTGGATTG
GAGGATTTGG TCTAGGAGAG AGGATTGAAG AGCGACCTGC TCTTCTAAGT GCCATTATAG ATGTCTTGCC AGATGAAAAG
CCACGCATGA TCAGTGGGCT TGGGCTCCCA GAGGAAATCT TGGAAGGAAT TGATGCTGGG ATTGATCTTT TTGATTCAAC
GTACGTATAT TGCCTTACAC TTGGAGGATT TGCACTCACG TTTTCGCTAG ACAACGGTGG AAATCAATAT GATTTTCAGA
GATGCCAGGT TGAAAGGGAC TTGACTAAAA TCAATTTGAG AGCAAAAGTT TATAGCAAAG ATATGTCCCC CATTTTAGGA
AACTGCACCT GCTATACATG CCGGAATCAT ACTAAAGCAT ACATCAATCA CTTATTTAAT GTTCATGAAA TGCTGGCACA
GACTCTGCTA GAAATCCATA ATACACACCA CTACCTGATG TTCTTCCGTG TAATAAGGGA AGCAATAAAG GATGGAAGAT
TTAAGAAATT TCGAATGACA TTCATTGAGA GCAGGCGTGT GCATCAGGAA ACGAAAGCTG ATTGTGCTTG A

>Vigan.06G001400.01
MKFVVKKAYC SGGRIGALEL GSCPKPIETP ALLLSTRKGL PHFIAPDLLT SLPFPDSHLL QISPLHFLEG LASTTISKIG
GLHQMLSLHQ YGIAAVARDS IQCLPESKGA TKLGPSFETP CGRLSINSKD YVEMISCMRP NIWATLADEV PAWVSEKRNK
TSVDRTVRWL DDCLALNPAA GSVFGAVVGG PNFDERMRCA MEVAKRNVSG YWIGGFGLGE RIEERPALLS AIIDVLPDEK
PRMISGLGLP EEILEGIDAG IDLFDSTYVY CLTLGGFALT FSLDNGGNQY DFQRCQVERD LTKINLRAKV YSKDMSPILG
NCTCYTCRNH TKAYINHLFN VHEMLAQTLL EIHNTHHYLM FFRVIREAIK DGRFKKFRMT FIESRRVHQE TKADCA*