VIGGS:GBrowse

Vigan.06G006700.01

Basic Information:

Name:	Vigan.06G006700.01 Multiple alignment Variant Information
Position:	Chr06:626308..628789 (- strand)
Length:	2482

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LVF0, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.23,4.12,1.24,6.04,6.68,1.90,6.75

Automatic updates:

Name:	NM_001251072 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527312 (LOC100527312), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001317432 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related Rab-11 family protein (LOC100789008), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:626308..626894 (- strand)
Length:	587
Type:	three_prime_UTR

Position:	Chr06:626895..627354 (- strand)
Length:	460
Type:	CDS

Position:	Chr06:628160..628386 (- strand)
Length:	227
Type:	CDS

Position:	Chr06:628387..628789 (- strand)
Length:	403
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G006700.01
TGAACACTTA CAACATTGCA AGTGAAAATA TTTCATTTTC AGTTGTTAGA AAAGTGTGAA TATCCCAATC TTCCTTTCTT
GTCGTGTGTT CCAAGTTGCT GTCGAAATTC TAAACTGTGA ACTCTGTTTT CCTCTGCTTT CAGCAAAGAA CGCTTTTCAG
AGGCAACACA AAACCAACAT TGATGAATGA AACTGATTGA CATGCCATTT TTCGCTTACC CAATTGCCTC TCCAACCACA
ACCAACCACC CCTTTTTCCC TTCCCTATTA AACTACCTTC CTTCCAGCCA CAGAAACCGT GTGCACATAC AAAGAAAAAA
AAGGTCTCGT TTTTATGCAG AAAAAAAATC TGGGGTTTGC ATTGTTGAGT TCACTTTTCA AAAGGGTTAT TTCTTGAAGC
GTAATGGCTC AGTGGCAGGG TGATGCTGAT GAGGGCATAG ACTACATGTT CAAGATTGTG ATGGTTGGTG ACTCTGGGGT
TGGAAAGTCT CAGCTTTTGA ATCGGTTTGT GAAGAACGAA TTCCATATGA AATCGAAACC CACAATTGGG GTGGAGTTTC
TGACAAGGAC ACTCGTCATG GACCACAAGC TTGTCAAGGC ACAGATTTGG GACACTGCTG GTCAAGAAAG GTACCAGGCA
ATTACAACAG CCTATTACAG GGGTGCAATT GGTGCGTTAC TAGCATACGA CATAACCAAG CAGCAAACCT TTGATCATGT
TGAGAAGTGG TTGGATGAGC TGCGGATACA CGCTGATCGA AATATACTTG TCATGCTTGT TGGCAACAAA TCTGACCTGA
GTTCTCTTCG AGCAGTGCCT GTTGAAGTGG CTAGAGAGTT CGCACAGCAA GAGGGTCTAT TCTTTCTGGA GACATCTGCT
CTTGACTCCA GCAATGTGGA ATCAGCTTTC GTTGGTCTCC TCTCTCAAGT ATATAGAACA GTCAGTAGGA AGCAAATCAT
TGTGGATGGA CATGAAGCAA ATTGGGACAA AGTAAACCTT GGACTTGAAG GAACAAACAT TAAGATGCCA TTTCAAGAAC
CTGAATGCCA CAATGCTAAA AAGAGATCCA ATTGCTGCAG TATTCTTTAG AATTTTGTGT TCACCTAGAG CCACCTTTAT
CTTGGGTAAA GACTATTTTG CTCTCTTCCC ATGTTGTGGC GCATTAATGT AGACTTTGCC ATCTATTTTT CCTTCCTTTA
CCTTTCAGGA TATTTGTTAG GCATAGTTTT ACAAACTCAA GAATGATATG ATGAATTTGA GTAGTCTGTT CGAAATGTAT
CTAGAAGTGA AGCTTTTGCC TGGACTAATG CTCAATGCTG CTTCCCAAGA ATGCAAATAG GACTTTTTTC TCTTAGTGCT
TCTAAAACAA TTCATGCTGA TATTGAATGA AGTTTGATCA TCCATGGAAC ATTCAAGCAT ATCCTTGCTA AAGTTGTTGT
TATCCCCTTT TTCCAGGCAC TGGATTTTTA TGTTGTTTTA ATTGCATACC CACTTGATCT CAGCATATTC CGGTTGATGT
GATCATAAGT TTTCATTTAG GATTTATATG TTACAATTGG AACAACCCAT TGCTAATTTC TTTAGTCCAG CAACCAGTGT
GAATGAGGGT TGCAGAAGAT AAAGTTTCTA ATGAGTTTGT AGGAGACTTT CAATAATGTT GAATCTGACA AATGTTT

[show][hide][copy]CDS

>Vigan.06G006700.01
ATGGCTCAGT GGCAGGGTGA TGCTGATGAG GGCATAGACT ACATGTTCAA GATTGTGATG GTTGGTGACT CTGGGGTTGG
AAAGTCTCAG CTTTTGAATC GGTTTGTGAA GAACGAATTC CATATGAAAT CGAAACCCAC AATTGGGGTG GAGTTTCTGA
CAAGGACACT CGTCATGGAC CACAAGCTTG TCAAGGCACA GATTTGGGAC ACTGCTGGTC AAGAAAGGTA CCAGGCAATT
ACAACAGCCT ATTACAGGGG TGCAATTGGT GCGTTACTAG CATACGACAT AACCAAGCAG CAAACCTTTG ATCATGTTGA
GAAGTGGTTG GATGAGCTGC GGATACACGC TGATCGAAAT ATACTTGTCA TGCTTGTTGG CAACAAATCT GACCTGAGTT
CTCTTCGAGC AGTGCCTGTT GAAGTGGCTA GAGAGTTCGC ACAGCAAGAG GGTCTATTCT TTCTGGAGAC ATCTGCTCTT
GACTCCAGCA ATGTGGAATC AGCTTTCGTT GGTCTCCTCT CTCAAGTATA TAGAACAGTC AGTAGGAAGC AAATCATTGT
GGATGGACAT GAAGCAAATT GGGACAAAGT AAACCTTGGA CTTGAAGGAA CAAACATTAA GATGCCATTT CAAGAACCTG
AATGCCACAA TGCTAAAAAG AGATCCAATT GCTGCAGTAT TCTTTAG

[show][hide][copy]PROTEIN

>Vigan.06G006700.01
MAQWQGDADE GIDYMFKIVM VGDSGVGKSQ LLNRFVKNEF HMKSKPTIGV EFLTRTLVMD HKLVKAQIWD TAGQERYQAI
TTAYYRGAIG ALLAYDITKQ QTFDHVEKWL DELRIHADRN ILVMLVGNKS DLSSLRAVPV EVAREFAQQE GLFFLETSAL
DSSNVESAFV GLLSQVYRTV SRKQIIVDGH EANWDKVNLG LEGTNIKMPF QEPECHNAKK RSNCCSIL*