GBrowse Details

Vigan.06G009800.01

Basic Information:
Name: Vigan.06G009800.01
Multiple alignment
Variant Information
Position: Chr06:967231..974353 (+ strand)
Length: 7123
Functional Information:
Description: Similar to MATE efflux family protein. [V7AJP8, Phaseolus vulgaris]
GO: Biological Process: drug transmembrane transport (GO:0006855)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: membrane (GO:0016020)
Molecular Function: drug transmembrane transporter activity (GO:0015238)
Molecular Function: antiporter activity (GO:0015297)
InterPro: Multi antimicrobial extrusion protein (IPR002528)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.00,0.00,0.03,29.96,0.00,0.03,0.02
Arabidopsis thaliana homolog: AT1G51340.2, AT3G08040.1
Automatic updates:
Name: KM090855 NCBI(nuccore)
Organism: Vigna umbellata
Description: Vigna umbellata Al-activated citrate transporter (MATE1) mRNA, complete cds.
PubMed ID: 24372448 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:967231..967732 (+ strand)
Length: 502
Type: five_prime_UTR
Position: Chr06:967903..968003 (+ strand)
Length: 101
Type: five_prime_UTR
Position: Chr06:968004..968080 (+ strand)
Length: 77
Type: CDS
Position: Chr06:968513..968634 (+ strand)
Length: 122
Type: CDS
Position: Chr06:969359..969712 (+ strand)
Length: 354
Type: CDS
Position: Chr06:970456..970640 (+ strand)
Length: 185
Type: CDS
Position: Chr06:970786..970921 (+ strand)
Length: 136
Type: CDS
Position: Chr06:971935..972031 (+ strand)
Length: 97
Type: CDS
Position: Chr06:972112..972212 (+ strand)
Length: 101
Type: CDS
Position: Chr06:972446..972609 (+ strand)
Length: 164
Type: CDS
Position: Chr06:973214..973402 (+ strand)
Length: 189
Type: CDS
Position: Chr06:973491..973586 (+ strand)
Length: 96
Type: CDS
Position: Chr06:973748..973869 (+ strand)
Length: 122
Type: CDS
Position: Chr06:974082..974124 (+ strand)
Length: 43
Type: CDS
Position: Chr06:974125..974353 (+ strand)
Length: 229
Type: three_prime_UTR


>Vigan.06G009800.01
CTTTTTTTTT TATCAATTCT AAAGTTCTAT TCATCTTTTT TTATCAATTC TGAAATTATA TAGCATCTCC AATGCACCGA
TTCCTCCACT ATATATATGT GATAACTGCT TAGTAAGAAT TTATTTTAGT AATAACTAGG TTTTTTGTAG ACTAGGATAT
GTTCTTTTTA AACACATTAT TTTGACTTGT TTTTTGTTCT TATTAGTTAA AATTGATTCA AAACCACAGA AATCGGGGAG
AAAAGTATGA AATCCACGAA GTTTTATATA TGATAACCAT TAAACATTAG ATTATAGGGA AGAATATAAA TTATTATGAT
TTGTGTGTGT TTATAGTTGT CGAGATGAAA TATATAGTAG CATAGTTTAA CTGAGGAAGG TTCCAACTGT GAACAAGACA
AAACTATGAT ACTCGTAAAT GCTTCATTAT TTTGCTCTTG GATATCCCCA AACCACTCCT ATAAAACCAT CACTTCTCCA
GTCATCTTTC AACACCAAAA AGATTCTTGT CGTTGAGGAT TTTCTCCCTC TGAGATCAAT TTCTTCAAAC ACTTCTTCTG
CATAGTTTTT TCACTTCTGC TGTGAGTTCA TCAAAATTCA TTAATGGAAG AGAATGGTAG TTCCAATGAA CCAAACAACA
ACTCAAACTG GCCTCTCTTC ATTTTCTTCA AAGGTGCAAG GCATGTTTTC AAGCTGGATG AACTTTCTCG GGAGATATTA
GGGATTGCCT TTCCCTCAGC ACTAGCCGTT GCAGCTGATC CACTTGCTTC TCTAATTGAC ACAGCATTCA TAGGCCACAT
AGGACCTGTG GAACTTGCTG CTGCAGGAGT TTCCATTGCT TTGTTCAACC AAGCTTCAAG AATCACCATT TTTCCTCTTG
TGAGCATCAC CACTTCATTT GTGGCTGAGG AAGATACTCT TGAAAAGCTG AATGTTCAAA ATGGTAACAA ATTAAAGCTC
AAAGAAGTGA TTATGCCAGA AGATCAGATG CTTCAAGACT TGGAAAAAAA TACCCTCAAA GAGAATATTA AAACTTCAGC
AAAACCTGTG AATGGAAAAC CTGAATTAAA GGATCTCGAA GTGAAAAGTT TTGGATCTCA AGCTGTGGAA AATAATAATG
CTACAACGGA CAACAACGAC ATAGAAACTG GAGATGAAGG CAACAAAAGT ATCTGCAAGT CTTCGTGGAT TACTAAGAGT
AAGGAGAAAG TTGTAAAGAA GAAGAGACGT ATTGCTTCAG CATCAACAGC ACTACTTTTT GGCACCATCC TTGGTCTTAT
TCAAACTGCT GTTCTTATAT TTGCAGCAAA ACCTCTCTTA CGCGTTATGG GTGTGAAACC AGATTCTCCA ATGCTAAATC
CAGCAGAAAG GTACTTAAAA CTGAGATCGA TTGGAGCACC TGCAGTGCTT CTCTCCTTGG CCATGCAAGG AATCTTTAGA
GGGTTTAAGG ATACAAAAAC TCCATTATAT GTCATAGTTT TGGGATATAC ATTCAATGTC ATCTTGGACC CAATTCTTAT
TTTCACATTG AAATTAGGCA TCAACGGTGC AGCCATTTCC CATGTTCTTT CTCAGTACAT GATGGCAATC ACTCTCTTAC
TGATATTAAT GAAAAAAGTG CATCTCCTAC CTCCAAGCAT CAAGGATTTA CAGATTTTCA GATTTCTTAA AAATGGAGGT
TTGTTGATGC TGAGGGTGAT AGCAGTGACA TTTTGTGTTA CCTTGGCAGC GTCATTAGCA GCAAGGCTTG GTTCAATTCC
CATGGCTGCA TTTCAGACAT GCCTGCAAGT CTGGTTGACA TCATCTCTTC TTGCAGATGG TTTAGCTGTT GCTGTTCAGG
CAATTCTAGC TTGTTCATTT GCTGAAAAGG ACTATAAGAA AACAACAGCA GCTGCAGTAA GAACACTGCA AATGAGTTTT
GTTTTAGGAA CGGGTCTCTC TCTTGCTGTT GGACTTGGAT TATACTTTGG AGCTGGAATA TTCTCCAAAA ATGTTCATGT
TGTGCATTTA ATTAAAATAG GCATCCCGTT TGTGGCTGCT ACTCAACCAA TAAATTCTTT AGCCTTTGTG TTTGATGGAG
TCAACTATGG AGCTTCTGAT TTTGCATACT CAGCATGCTC TCTCGTGGTG GTTTCCATAG TAAGTGTAGC CATAGAATTT
CTTCTCTACA GGACCAAACA TTTCATTGGG ATTTGGATTG CATTAACCAT ATATATGACT CTTCGAATGA TGGCTGGTGT
ATGGAGGATG GGAACTGGGA CAGGACCATG GCGCTATCTC AGAGGTTGAT CATTGACTAG GCACATATTA TGTAATGACC
AGACAAATTT TGTTGTCGAG ATCTGATTTC ATATCACGTT CTAACTTTCC CCTTATACAT AGGAACTTTA TTATATAGTT
TTGTAATACA TCTAGGTTTG CTTCATTCAC ACTTATTTTT TTACTTTTTG TAATGCATCA TTGCTTCATA TACACGTTAT
ATATATATAT ATATATCATG TTGTGGTTTT CAGAAGAT

>Vigan.06G009800.01
ATGGAAGAGA ATGGTAGTTC CAATGAACCA AACAACAACT CAAACTGGCC TCTCTTCATT TTCTTCAAAG GTGCAAGGCA
TGTTTTCAAG CTGGATGAAC TTTCTCGGGA GATATTAGGG ATTGCCTTTC CCTCAGCACT AGCCGTTGCA GCTGATCCAC
TTGCTTCTCT AATTGACACA GCATTCATAG GCCACATAGG ACCTGTGGAA CTTGCTGCTG CAGGAGTTTC CATTGCTTTG
TTCAACCAAG CTTCAAGAAT CACCATTTTT CCTCTTGTGA GCATCACCAC TTCATTTGTG GCTGAGGAAG ATACTCTTGA
AAAGCTGAAT GTTCAAAATG GTAACAAATT AAAGCTCAAA GAAGTGATTA TGCCAGAAGA TCAGATGCTT CAAGACTTGG
AAAAAAATAC CCTCAAAGAG AATATTAAAA CTTCAGCAAA ACCTGTGAAT GGAAAACCTG AATTAAAGGA TCTCGAAGTG
AAAAGTTTTG GATCTCAAGC TGTGGAAAAT AATAATGCTA CAACGGACAA CAACGACATA GAAACTGGAG ATGAAGGCAA
CAAAAGTATC TGCAAGTCTT CGTGGATTAC TAAGAGTAAG GAGAAAGTTG TAAAGAAGAA GAGACGTATT GCTTCAGCAT
CAACAGCACT ACTTTTTGGC ACCATCCTTG GTCTTATTCA AACTGCTGTT CTTATATTTG CAGCAAAACC TCTCTTACGC
GTTATGGGTG TGAAACCAGA TTCTCCAATG CTAAATCCAG CAGAAAGGTA CTTAAAACTG AGATCGATTG GAGCACCTGC
AGTGCTTCTC TCCTTGGCCA TGCAAGGAAT CTTTAGAGGG TTTAAGGATA CAAAAACTCC ATTATATGTC ATAGTTTTGG
GATATACATT CAATGTCATC TTGGACCCAA TTCTTATTTT CACATTGAAA TTAGGCATCA ACGGTGCAGC CATTTCCCAT
GTTCTTTCTC AGTACATGAT GGCAATCACT CTCTTACTGA TATTAATGAA AAAAGTGCAT CTCCTACCTC CAAGCATCAA
GGATTTACAG ATTTTCAGAT TTCTTAAAAA TGGAGGTTTG TTGATGCTGA GGGTGATAGC AGTGACATTT TGTGTTACCT
TGGCAGCGTC ATTAGCAGCA AGGCTTGGTT CAATTCCCAT GGCTGCATTT CAGACATGCC TGCAAGTCTG GTTGACATCA
TCTCTTCTTG CAGATGGTTT AGCTGTTGCT GTTCAGGCAA TTCTAGCTTG TTCATTTGCT GAAAAGGACT ATAAGAAAAC
AACAGCAGCT GCAGTAAGAA CACTGCAAAT GAGTTTTGTT TTAGGAACGG GTCTCTCTCT TGCTGTTGGA CTTGGATTAT
ACTTTGGAGC TGGAATATTC TCCAAAAATG TTCATGTTGT GCATTTAATT AAAATAGGCA TCCCGTTTGT GGCTGCTACT
CAACCAATAA ATTCTTTAGC CTTTGTGTTT GATGGAGTCA ACTATGGAGC TTCTGATTTT GCATACTCAG CATGCTCTCT
CGTGGTGGTT TCCATAGTAA GTGTAGCCAT AGAATTTCTT CTCTACAGGA CCAAACATTT CATTGGGATT TGGATTGCAT
TAACCATATA TATGACTCTT CGAATGATGG CTGGTGTATG GAGGATGGGA ACTGGGACAG GACCATGGCG CTATCTCAGA
GGTTGA

>Vigan.06G009800.01
MEENGSSNEP NNNSNWPLFI FFKGARHVFK LDELSREILG IAFPSALAVA ADPLASLIDT AFIGHIGPVE LAAAGVSIAL
FNQASRITIF PLVSITTSFV AEEDTLEKLN VQNGNKLKLK EVIMPEDQML QDLEKNTLKE NIKTSAKPVN GKPELKDLEV
KSFGSQAVEN NNATTDNNDI ETGDEGNKSI CKSSWITKSK EKVVKKKRRI ASASTALLFG TILGLIQTAV LIFAAKPLLR
VMGVKPDSPM LNPAERYLKL RSIGAPAVLL SLAMQGIFRG FKDTKTPLYV IVLGYTFNVI LDPILIFTLK LGINGAAISH
VLSQYMMAIT LLLILMKKVH LLPPSIKDLQ IFRFLKNGGL LMLRVIAVTF CVTLAASLAA RLGSIPMAAF QTCLQVWLTS
SLLADGLAVA VQAILACSFA EKDYKKTTAA AVRTLQMSFV LGTGLSLAVG LGLYFGAGIF SKNVHVVHLI KIGIPFVAAT
QPINSLAFVF DGVNYGASDF AYSACSLVVV SIVSVAIEFL LYRTKHFIGI WIALTIYMTL RMMAGVWRMG TGTGPWRYLR
G*