GBrowse Details

Vigan.06G010800.01

Basic Information:
Name: Vigan.06G010800.01
Multiple alignment
Variant Information
Position: Chr06:1082354..1091877 (+ strand)
Length: 9524
Functional Information:
Description: Similar to Uncharacterized protein. [I1M0X5, Glycine max]
InterPro: Folate-sensitive fragile site protein Fra10Ac1 (IPR019129)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:92.59,34.32,13.19,17.05,11.07,15.27,4.69,13.43
Arabidopsis thaliana homolog: AT4G15030.2
Automatic updates:
Name: NM_001255064 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein FRA10AC1-like (LOC100782621), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:1082354..1082622 (+ strand)
Length: 269
Type: five_prime_UTR
Position: Chr06:1082623..1082678 (+ strand)
Length: 56
Type: CDS
Position: Chr06:1082782..1082849 (+ strand)
Length: 68
Type: CDS
Position: Chr06:1084107..1084188 (+ strand)
Length: 82
Type: CDS
Position: Chr06:1084774..1084857 (+ strand)
Length: 84
Type: CDS
Position: Chr06:1085704..1085743 (+ strand)
Length: 40
Type: CDS
Position: Chr06:1086402..1086447 (+ strand)
Length: 46
Type: CDS
Position: Chr06:1087736..1087794 (+ strand)
Length: 59
Type: CDS
Position: Chr06:1089764..1089831 (+ strand)
Length: 68
Type: CDS
Position: Chr06:1089999..1090082 (+ strand)
Length: 84
Type: CDS
Position: Chr06:1090166..1090230 (+ strand)
Length: 65
Type: CDS
Position: Chr06:1091367..1091467 (+ strand)
Length: 101
Type: CDS
Position: Chr06:1091468..1091877 (+ strand)
Length: 410
Type: three_prime_UTR


>Vigan.06G010800.01
CGTGTTTAAA AAAGGTTGTA TGTTTTTTGT GAATTAATTT CTTTTGTATT TTTCTGAGAA GATTTCGTGG TGTTATCAAG
TGAAAAAAAA TTTGTCATTA GGGAGATTAT TATAAAAAAT ATTTAAATTA AATAAGAAAA GGGTTAGAGT TAAGGGTTGC
AGAAGTGAGG AAACCCAATT TGAGGGTTGT TTTGCCTTCA CAGGGAAAGG GCAAAGCAAA GGAAACAAAA TTCCAATTGC
TTTACTTCAT TTTTCTTGTT CTCATAACCA TGGCATCGTT TGGGTCCCTC AAATCCACCA TTTTCGACAA AGAAGAGAGA
AAGCAGCAGT ATCAGTGGCA TATTCGAGGC CTCAATGCAT ACGACCGTCA CAAAAAATTC ATCAATGATT ACGTTAATTT
TTATGGAAAA GAACGACCTT CAAACTTGAA GTTGCCTATT AAAACAGATC AAGATACACT GAGAGAAGGA TACAGATTCA
TTCGGTCAGA GGAAGATGAT ATGAATCCAT CGTGGGAACA AAGGCTAGTC AAGCGTTATT ATGACAAGCT TTTTAAGGAA
TACTGCCTAG CTGACATGTC ACAATACAAG AGTGGTAAGA TTGGCCTCAG GTGGAGGACA GAGAAGGAAG TCATGTCTGG
CAAAGGCCAG TTCATATGTG GTAACAAGCA TTGCAATGAG AAAGATGGTT TAACAAGCTA CGAGGTGAAC TTTTGTTACT
TTGAAGCTGG AGAAAACAAA CAAGCCCTAG TTAAGTTGGT AACATGTGAG CGATGTGCAT GCAAACTCAA CTATAAGAGG
AAGAAAGAAA AGGAGCAGTT AGAAAAAAGG CAACAAGATC AAGATAGGCG AAAGAGGAAT CGTTCAAAGA GTGATGATGA
TCTAGATGAT TACCAAGAAA GCGACGAGAG AAAGAGAAAA GGCAAAAAGG CTTTGACTTC GTCCAGTCGT AAAATTGATG
ATGATGATGA CCATGACGAC GATGATAACT TAGATGAGTT TCTTGAGGGT ATGTTTCCTT GATCTTGGCT GATCGGCTGT
CACACCTTAA AAGTGCTTCC GGGCATCAAA GCTGAGCAAA CAGAAAAACG ATAGGTTGCA TGTGTATAGT GTTGTCTCAA
TAATGAAAAT TGCATATCAG AATGATCTGC TTCATGACCC TGAACTGGTT TTACCATATA TAATGGACAA AAGTTGGTTG
TCTGATGTAT TTTTAATGTG AAACGCATGC AGCAGCTATT GTGAATGTGC GTATTTTGAT GTCATGATTT TTGTATGTGA
CTTCAAAATA TGATAAAATT CGAAGTATGT CATGTTATAA TGGTTTGTGC ATGAAGTGTA TGATGTTGTA TCACTAGGAT
TTTCAGTCAT TGAGATTTTT CCTCTCATTA GTTTAAACTG TATAGTTTAT TAAATAAAAC ATGAAGAGAA AC

>Vigan.06G010800.01
ATGGCATCGT TTGGGTCCCT CAAATCCACC ATTTTCGACA AAGAAGAGAG AAAGCAGCAG TATCAGTGGC ATATTCGAGG
CCTCAATGCA TACGACCGTC ACAAAAAATT CATCAATGAT TACGTTAATT TTTATGGAAA AGAACGACCT TCAAACTTGA
AGTTGCCTAT TAAAACAGAT CAAGATACAC TGAGAGAAGG ATACAGATTC ATTCGGTCAG AGGAAGATGA TATGAATCCA
TCGTGGGAAC AAAGGCTAGT CAAGCGTTAT TATGACAAGC TTTTTAAGGA ATACTGCCTA GCTGACATGT CACAATACAA
GAGTGGTAAG ATTGGCCTCA GGTGGAGGAC AGAGAAGGAA GTCATGTCTG GCAAAGGCCA GTTCATATGT GGTAACAAGC
ATTGCAATGA GAAAGATGGT TTAACAAGCT ACGAGGTGAA CTTTTGTTAC TTTGAAGCTG GAGAAAACAA ACAAGCCCTA
GTTAAGTTGG TAACATGTGA GCGATGTGCA TGCAAACTCA ACTATAAGAG GAAGAAAGAA AAGGAGCAGT TAGAAAAAAG
GCAACAAGAT CAAGATAGGC GAAAGAGGAA TCGTTCAAAG AGTGATGATG ATCTAGATGA TTACCAAGAA AGCGACGAGA
GAAAGAGAAA AGGCAAAAAG GCTTTGACTT CGTCCAGTCG TAAAATTGAT GATGATGATG ACCATGACGA CGATGATAAC
TTAGATGAGT TTCTTGAGGG TATGTTTCCT TGA

>Vigan.06G010800.01
MASFGSLKST IFDKEERKQQ YQWHIRGLNA YDRHKKFIND YVNFYGKERP SNLKLPIKTD QDTLREGYRF IRSEEDDMNP
SWEQRLVKRY YDKLFKEYCL ADMSQYKSGK IGLRWRTEKE VMSGKGQFIC GNKHCNEKDG LTSYEVNFCY FEAGENKQAL
VKLVTCERCA CKLNYKRKKE KEQLEKRQQD QDRRKRNRSK SDDDLDDYQE SDERKRKGKK ALTSSSRKID DDDDHDDDDN
LDEFLEGMFP *