GBrowse Details

Vigan.06G016600.01

Basic Information:
Name: Vigan.06G016600.01
Multiple alignment
Variant Information
Position: Chr06:1675286..1683524 (+ strand)
Length: 8239
Functional Information:
Description: Similar to S-adenosyl-L-methionine-dependent methyltransferases superfamily protein. [XP_007030676.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.06,2.75,7.92,8.22,7.46,14.98,7.11,10.15
Arabidopsis thaliana homolog: AT3G05100.1
Automatic updates:
Name: NM_001254260 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100798127 (LOC100798127), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:1675286..1675862 (+ strand)
Length: 577
Type: five_prime_UTR
Position: Chr06:1675863..1676242 (+ strand)
Length: 380
Type: CDS
Position: Chr06:1682167..1682821 (+ strand)
Length: 655
Type: CDS
Position: Chr06:1682822..1683524 (+ strand)
Length: 703
Type: three_prime_UTR


>Vigan.06G016600.01
CTAACAGGTA CCAATTTTAC ATTCCTGCTT TCTTCGATTC ATTGCAACGA ATTCCAATGT GTCTCCATTG TTTATTCATC
TTGTTTCTCC CCCATTTCAC GATCTATGCT CAATGTCTCT GCTATGTTCG ATTTCAATTG AACTCACTGT TGGAAATGCC
GTTAGTGCTT CTGGTTTTCT ACCTGCATCA ATTACCCATC TGGGTCATTT CTAATACCCT AATAAATTGA ATGTTTAAAG
TTGTATACTT TCATGACTGT GTATGCTCAT CTGCATGGAT TTTTCAATTG GGTTTTGATT TAGCTCTCTT TATGTGTTTG
TGCATCATGT CACTTAGGGC GCTGTAGTTA TATAACTGTG TTTTTGGATA AACTTATATA TATAGAAGGA AACACTACAC
TAAACCAAAC ATACCCCATA TAAAGGAGCT TTGAGGCTGT TTAGCTGAGA TTTCTATTCT ATCGCACTGT GGTAATTACG
ATTTTATGGG TAATTGAGCA TTCAGCAAGG ACAGGTGTGT GTAGTCTCAA TTTTTCTTCT TTCTTCACAG ACTGTAGTAA
GCTGCGGTTA GTCATAGATG GCACTCTCGG CTTCACGAGC AATGTCAAAG GGTGTGGTGG TATCGGTTCC TGTTTTGGTT
CTGTCTGCAT TAGTGGCTAC GGTTTTCCTG TTCTTCCTTT TGTCCTCCCT TTCATCCTGC TCCTGCCCTA CTACAGACAT
CTCTCCTTCC ATTGCTAGGA GTGTTGGTAT TGGTGCTTCC CAGTCTGGCA GTGGTGATGT TCCATCATTA CCAATGAAGG
AGTCTGGCAG TAGTATTGCT CCGTTGTCAA CAAGGAAAGA GGATGTTGAG TGGGTGAAGG ATCAAATCCA AGCAAATGGG
CTTCATATGC ATGACAATGT GCTTCGCAAG GGTATTAACC CTCGCACCAG GGCTCAGCAA CTTGAGGATC TGAGACAATT
TAAGGGCATA TCTCACTATG AGAAGCCTGA ATCAGATAAT CACACTGCCT TCCCATGCCC TGGGGAACTG CTAGTGGAAG
AGCACCATAG CAACTATGGG GAACCTTGGG CTGGGGGAAG AGATGTATTT GAGTTCCTTG CACAAGCCAC TCAACTCAGA
CCAGACTCAT CGGTGCTAGA GATAGGCTGT GGCACTCTTC GAGTTGGTTT GCATTTCATT CGATACTTAA ATCCTGAACA
CTTCCATTGT CTTGAAAGAG ACGAGCTGTC TCTGATGGCA GCATTTATGT ATGAGCTTCC TGCCCATGGC CTTCTACACA
AACGGCCTTT GATAGTTAAG GGGGAAGACA TGGATTTCAG CAAGTTTGGT TCTGGCACAG TTTATGATTT GATTTATGCT
AGTGCTGTAT TCCTTCATAT GCCTGATAAA CTTGTGTGGA CTGGACTGGA AAGATTAGCA TCTAAATTGA AACCATATGA
TGGAAGAATT TTTGTATCGC ATAATATAAA GTTCTGCTCA CGGTTGGGAG GAGAGGAATG CACGAAGAGG CTAGCAAGTT
TGGGGCTCGA GTATCTTGGG AAGCAAACTC ATGATAGTTT GTTATTCAAC CATTATGAGA TATGGTTTGA GTTTAGACGG
TCAAAGGCAT AATGTATGTG TTTCTGTTAT ATAGAAGCGT GAGAAACATC TCTAAATGGC TTCATGACAC TAAATGTGTG
TTGCTCATCT GACAAATCTT CAGCAACAAA ATGATATCCT TGCTTTGAAT CTTAAGAGGT GGCATTTTTT CAACTCGGTT
CATCTCGTGC AGAAATCTGT GATACACTTT TGACTCTTCA AAACAGATGA ACCCTATGTA ATTTGATCGA GGACTCTACA
AAGGCAGGAA GATTTGTATT ATTTTTTGGG GTCCTTTTGT AGTAGGGCAC CTTGAACTTT ACATTTTCTC ATTGTTTCTA
TATAGGTTCT GATATGATGG TTGTATTTAG CAGTCTTGTT ATCTGGCAAC TGATTGCTGT TTTGACAATA ATTACACTAG
ATGGTCTCGA ACACCTCTAA TGATGATGTG ACTGTGGAAT ACATGTACTT TTAGAATTAT GTGCTATAAC AGGAGTGTTT
TTCAGAAGGT TCCAAAATAC TCTCCGTTAA AGGGAAAAAA CACTATGATG GAGGGACCCA AAGACTGTTT AAAGTGTTTT
TCCTTTTTGA GCCTTATATG TAATGTTAAA ATTGCAAGTA TACTTGGACA CTTGTGAAAT CTTGTAAAGG GTCTTCAACC
CTCCTTTCTT CTTTCTTTCA CTTTTATTTG CTTTGCTTTG AGTCTGTAAA ATTGAATATT TTTTTCTCAG TAAGT

>Vigan.06G016600.01
ATGGCACTCT CGGCTTCACG AGCAATGTCA AAGGGTGTGG TGGTATCGGT TCCTGTTTTG GTTCTGTCTG CATTAGTGGC
TACGGTTTTC CTGTTCTTCC TTTTGTCCTC CCTTTCATCC TGCTCCTGCC CTACTACAGA CATCTCTCCT TCCATTGCTA
GGAGTGTTGG TATTGGTGCT TCCCAGTCTG GCAGTGGTGA TGTTCCATCA TTACCAATGA AGGAGTCTGG CAGTAGTATT
GCTCCGTTGT CAACAAGGAA AGAGGATGTT GAGTGGGTGA AGGATCAAAT CCAAGCAAAT GGGCTTCATA TGCATGACAA
TGTGCTTCGC AAGGGTATTA ACCCTCGCAC CAGGGCTCAG CAACTTGAGG ATCTGAGACA ATTTAAGGGC ATATCTCACT
ATGAGAAGCC TGAATCAGAT AATCACACTG CCTTCCCATG CCCTGGGGAA CTGCTAGTGG AAGAGCACCA TAGCAACTAT
GGGGAACCTT GGGCTGGGGG AAGAGATGTA TTTGAGTTCC TTGCACAAGC CACTCAACTC AGACCAGACT CATCGGTGCT
AGAGATAGGC TGTGGCACTC TTCGAGTTGG TTTGCATTTC ATTCGATACT TAAATCCTGA ACACTTCCAT TGTCTTGAAA
GAGACGAGCT GTCTCTGATG GCAGCATTTA TGTATGAGCT TCCTGCCCAT GGCCTTCTAC ACAAACGGCC TTTGATAGTT
AAGGGGGAAG ACATGGATTT CAGCAAGTTT GGTTCTGGCA CAGTTTATGA TTTGATTTAT GCTAGTGCTG TATTCCTTCA
TATGCCTGAT AAACTTGTGT GGACTGGACT GGAAAGATTA GCATCTAAAT TGAAACCATA TGATGGAAGA ATTTTTGTAT
CGCATAATAT AAAGTTCTGC TCACGGTTGG GAGGAGAGGA ATGCACGAAG AGGCTAGCAA GTTTGGGGCT CGAGTATCTT
GGGAAGCAAA CTCATGATAG TTTGTTATTC AACCATTATG AGATATGGTT TGAGTTTAGA CGGTCAAAGG CATAA

>Vigan.06G016600.01
MALSASRAMS KGVVVSVPVL VLSALVATVF LFFLLSSLSS CSCPTTDISP SIARSVGIGA SQSGSGDVPS LPMKESGSSI
APLSTRKEDV EWVKDQIQAN GLHMHDNVLR KGINPRTRAQ QLEDLRQFKG ISHYEKPESD NHTAFPCPGE LLVEEHHSNY
GEPWAGGRDV FEFLAQATQL RPDSSVLEIG CGTLRVGLHF IRYLNPEHFH CLERDELSLM AAFMYELPAH GLLHKRPLIV
KGEDMDFSKF GSGTVYDLIY ASAVFLHMPD KLVWTGLERL ASKLKPYDGR IFVSHNIKFC SRLGGEECTK RLASLGLEYL
GKQTHDSLLF NHYEIWFEFR RSKA*