GBrowse Details

Vigan.06G021600.01

Basic Information:
Name: Vigan.06G021600.01
Multiple alignment
Variant Information
Position: Chr06:2413588..2424534 (+ strand)
Length: 10947
Functional Information:
Description: Similar to BZIP transcription factor bZIP99. [Q0GPG6, Glycine max]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Basic-leucine zipper domain (IPR004827)
Transcription factor TGA like domain (IPR025422)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:78.77,44.47,16.34,20.03,15.05,11.69,21.21,16.37
Arabidopsis thaliana homolog: AT3G12250.4
Automatic updates:
Name: BT096311 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-25J1 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:2413588..2413976 (+ strand)
Length: 389
Type: five_prime_UTR
Position: Chr06:2414531..2414596 (+ strand)
Length: 66
Type: five_prime_UTR
Position: Chr06:2414597..2414697 (+ strand)
Length: 101
Type: CDS
Position: Chr06:2416645..2416742 (+ strand)
Length: 98
Type: CDS
Position: Chr06:2418643..2418719 (+ strand)
Length: 77
Type: CDS
Position: Chr06:2418836..2419033 (+ strand)
Length: 198
Type: CDS
Position: Chr06:2419297..2419368 (+ strand)
Length: 72
Type: CDS
Position: Chr06:2419466..2419525 (+ strand)
Length: 60
Type: CDS
Position: Chr06:2421314..2421391 (+ strand)
Length: 78
Type: CDS
Position: Chr06:2421527..2421578 (+ strand)
Length: 52
Type: CDS
Position: Chr06:2421746..2422017 (+ strand)
Length: 272
Type: CDS
Position: Chr06:2422797..2423045 (+ strand)
Length: 249
Type: CDS
Position: Chr06:2424061..2424207 (+ strand)
Length: 147
Type: CDS
Position: Chr06:2424208..2424534 (+ strand)
Length: 327
Type: three_prime_UTR


>Vigan.06G021600.01
AAAAATGTCA AACAAAAATA TTAATTATCA GAAATAAAAT ACTGATAATA ATCCATGTTA AAGCACTAAA ACATTACCAT
TAAAATTTTA ATTAGAAAAT CATTAGCCCT TGGAAAGTGG AAGATTTTAG CAGAAGAAGA CATCTAGAGA TTGGGATCAT
CCCTGTTCCT GTCTCTCTCT TCTTTCTCTC TCTTCTCTTG GTTCCCTTCT TTACTTAAAT CTTAAAATCC AATAACTACA
AACAAAGTTC AACAGTACCA TCATCATACC CATCATCATC ATCATCATCA GAATTCCAAG GTGGGTTTGC TTCATCTTTT
ACCATAGTTT TATGTTGCAT GAGTAAAGAC TGTGATGTTC ATGGTGGATT TTAGTGCAAC TGGGACCAGG GGTTTTAGGT
TTTCATGTTT TGTTGATCTA CTGGGGAACT GAGGATGTGG TGGTGAAAAC GATGTATGGG GAGTAGAACT ACCGGAGGTT
TTGGTGTTGA AGATGACAAG GGAGCTGAAA GAGGAATGCC GAGCTTCAAT TCTGAGTTAC CCATTTCCAA TTCTAGTTAT
GCAGAGGGGA GCACAATTGA TTCTTTTCGT GTTTCTGACT TTGGTGCATT TGATCAGCCA TATCGCGTAG AGGATGCTGT
TGGCCTTAGT GGAAACCCAA TTTACAACTC ACTAAAAGTA AGTAGCCAAA CAATTTATCC GGGTTCTGTT CCCATTCATA
GCCTTGATCA GTTGCCAACT TCGCTTGATA AAAGCCCATT GACGAATCAA ACAGAGCTGC ATAGGTTGCG ATTACAGAAG
GTTCAATCAT CAAATCCTGA CACTATATTA ATTGGTAATA CAGATAACCA GGAGGAGTCT GCCATGGCTG ATGCCAGTCC
CAGGACTGAT ATTTCTACAG ATGTTGACAC TGACGACAAG AATCAGCCGT TTGATAGAAA TGAATCCCTT ACTATTGTTT
CTGACTCTAG TGACAGATCA AAAGATAAAT CAGATCAGAA GACTCTCCGC AGGCTTGCCC AGAACCGTGA AGCTGCAAGA
AAAAGCCGTT TGAGAAAGAA AGCCTATGTC CAACAGTTAG AAAGCAGTCG CTTGAAGCTG ACCCAACTAG AGCAAGAGCT
TCAACGAGCT AGGCAGCAGG GGATCTTCAT ATCAAGCTCG GGTGATCAAG CACATACACT AAGTGGAAAT GGGGCAATGC
AATTTGATGC AGAATATGCA AGGTGGCTGG AAGAGCAGAA TCGACAAATA AATGAGCTAA GAGCAGCTGT AAATTCTCAT
GCAAGTGACA CTGAACTGCG CATGATTGTT GATGGTATAT TGGCGCATTA TGATGAAATT TTTAGGTTGA AGGGTGTTGC
AGCCAAGGCT GATGTTTTCC ATCTGTTGTC TGGTATGTGG AAAACGCCTG CTGAGAGGTG CTTTTTGTGG CTTGGTGGTT
TTCGGTCATC TGAACTCCTC AAGCTGCTGG CAAATCAATT GGAACCTCTG ACAGAACAGC AGCTGATGGG TATCACCAAC
TTGCAGCAAT CTTCCCAACA GGCAGAAGAT GCATTGTCTC AGGGTATGGA AGCATTGCAA CAGTCCCTTG CGGAGACATT
GTCCACTGGA GCACCTGCCT CATCTGGTTC ATCAGGGAAT GTGGCAAATT ACATGGGTCA AATGGCTATG GCCATGGGTA
AGCTAGGAAC GCTTGAAGGA TTCATTCGAC AGGCCGATAA TCTTCGCCAG CAGACTCTAC AACAAATGCA CCGAATTCTG
ACGACTCGCC AATCGGCTCG TGCCCTCCTT GCCATACACG ACTATTTTTC GCGGCTGCGT GCTCTCAGTT CACTCTGGCT
GGCTCGCCCA AGAGATTGAT CGGCATGGTA AATAGTATGT TAAATTAAAT TTAATGGATC CATCACCAAC CAGCAATACT
TGCTCATCAT AGGTTTTACT TTGACAAGTT TACTTGTGTT GTATTGCAGT CTTTGTAACA CTGATGTTAG TGCTTCATTA
AGGCACATAG TCTAGAAACG AAATTGGTGA CAAAAAGTAT GCTTGTTGTC TCTACTAATA ATATTCACCA TTGAAATTGT
TGAATGGCCT TGTTTCTTCC ATAGAAATAT AGTTGCTTAT GATATATTTT AAGAGTTGTT TTAGTTGCCA TTGTTTTCCC
TTGGATCTGA ATCCATACAA ATTGGT

>Vigan.06G021600.01
ATGGGGAGTA GAACTACCGG AGGTTTTGGT GTTGAAGATG ACAAGGGAGC TGAAAGAGGA ATGCCGAGCT TCAATTCTGA
GTTACCCATT TCCAATTCTA GTTATGCAGA GGGGAGCACA ATTGATTCTT TTCGTGTTTC TGACTTTGGT GCATTTGATC
AGCCATATCG CGTAGAGGAT GCTGTTGGCC TTAGTGGAAA CCCAATTTAC AACTCACTAA AAGTAAGTAG CCAAACAATT
TATCCGGGTT CTGTTCCCAT TCATAGCCTT GATCAGTTGC CAACTTCGCT TGATAAAAGC CCATTGACGA ATCAAACAGA
GCTGCATAGG TTGCGATTAC AGAAGGTTCA ATCATCAAAT CCTGACACTA TATTAATTGG TAATACAGAT AACCAGGAGG
AGTCTGCCAT GGCTGATGCC AGTCCCAGGA CTGATATTTC TACAGATGTT GACACTGACG ACAAGAATCA GCCGTTTGAT
AGAAATGAAT CCCTTACTAT TGTTTCTGAC TCTAGTGACA GATCAAAAGA TAAATCAGAT CAGAAGACTC TCCGCAGGCT
TGCCCAGAAC CGTGAAGCTG CAAGAAAAAG CCGTTTGAGA AAGAAAGCCT ATGTCCAACA GTTAGAAAGC AGTCGCTTGA
AGCTGACCCA ACTAGAGCAA GAGCTTCAAC GAGCTAGGCA GCAGGGGATC TTCATATCAA GCTCGGGTGA TCAAGCACAT
ACACTAAGTG GAAATGGGGC AATGCAATTT GATGCAGAAT ATGCAAGGTG GCTGGAAGAG CAGAATCGAC AAATAAATGA
GCTAAGAGCA GCTGTAAATT CTCATGCAAG TGACACTGAA CTGCGCATGA TTGTTGATGG TATATTGGCG CATTATGATG
AAATTTTTAG GTTGAAGGGT GTTGCAGCCA AGGCTGATGT TTTCCATCTG TTGTCTGGTA TGTGGAAAAC GCCTGCTGAG
AGGTGCTTTT TGTGGCTTGG TGGTTTTCGG TCATCTGAAC TCCTCAAGCT GCTGGCAAAT CAATTGGAAC CTCTGACAGA
ACAGCAGCTG ATGGGTATCA CCAACTTGCA GCAATCTTCC CAACAGGCAG AAGATGCATT GTCTCAGGGT ATGGAAGCAT
TGCAACAGTC CCTTGCGGAG ACATTGTCCA CTGGAGCACC TGCCTCATCT GGTTCATCAG GGAATGTGGC AAATTACATG
GGTCAAATGG CTATGGCCAT GGGTAAGCTA GGAACGCTTG AAGGATTCAT TCGACAGGCC GATAATCTTC GCCAGCAGAC
TCTACAACAA ATGCACCGAA TTCTGACGAC TCGCCAATCG GCTCGTGCCC TCCTTGCCAT ACACGACTAT TTTTCGCGGC
TGCGTGCTCT CAGTTCACTC TGGCTGGCTC GCCCAAGAGA TTGA

>Vigan.06G021600.01
MGSRTTGGFG VEDDKGAERG MPSFNSELPI SNSSYAEGST IDSFRVSDFG AFDQPYRVED AVGLSGNPIY NSLKVSSQTI
YPGSVPIHSL DQLPTSLDKS PLTNQTELHR LRLQKVQSSN PDTILIGNTD NQEESAMADA SPRTDISTDV DTDDKNQPFD
RNESLTIVSD SSDRSKDKSD QKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLTQLEQ ELQRARQQGI FISSSGDQAH
TLSGNGAMQF DAEYARWLEE QNRQINELRA AVNSHASDTE LRMIVDGILA HYDEIFRLKG VAAKADVFHL LSGMWKTPAE
RCFLWLGGFR SSELLKLLAN QLEPLTEQQL MGITNLQQSS QQAEDALSQG MEALQQSLAE TLSTGAPASS GSSGNVANYM
GQMAMAMGKL GTLEGFIRQA DNLRQQTLQQ MHRILTTRQS ARALLAIHDY FSRLRALSSL WLARPRD*