GBrowse Details

Vigan.06G021800.01

Basic Information:
Name: Vigan.06G021800.01
Multiple alignment
Variant Information
Position: Chr06:2436199..2440587 (- strand)
Length: 4389
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7ALJ4, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site (IPR020892)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:90.50,67.87,33.18,47.48,52.63,57.59,40.62,30.77
Arabidopsis thaliana homolog: AT2G38730.1
Automatic updates:
Name: NM_001249596 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase CYP21 (CYP21), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Name: NM_001357108 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP22 (GMCYP22), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:2436199..2436612 (- strand)
Length: 414
Type: three_prime_UTR
Position: Chr06:2436613..2436723 (- strand)
Length: 111
Type: CDS
Position: Chr06:2437216..2437272 (- strand)
Length: 57
Type: CDS
Position: Chr06:2437372..2437404 (- strand)
Length: 33
Type: CDS
Position: Chr06:2437828..2437920 (- strand)
Length: 93
Type: CDS
Position: Chr06:2438732..2438819 (- strand)
Length: 88
Type: CDS
Position: Chr06:2439710..2439733 (- strand)
Length: 24
Type: CDS
Position: Chr06:2440357..2440541 (- strand)
Length: 185
Type: CDS
Position: Chr06:2440542..2440587 (- strand)
Length: 46
Type: five_prime_UTR


>Vigan.06G021800.01
GCGTGAGGCT CTTGGAATCG TTACGCAGTA GTTGTCTGAG GTGAAAATGG CTGCTTCGGT GGCAGGGAAC GCGACCACGA
ACACGAACGC GGGTGTGGAG TGGCACGTGC GTCCTCCAAA CCCTAAGAAC CCAATCGTCT TCTTCGATGT CACCATCGGC
AACATACCTG CTGGTCGAAT CAAGATGGAA CTCTTCGCCG ACATTGCGCC CAAAACCGCC GAGAATTTCA GGCAGTTCTG
CACTGGGGAG TACAGAAAAG CTGGACTTCC GGTTGGTTAC AAGGGTTGTC AATTTCATAG AGTGATTAAG GATTTTATGA
TTCAAGCTGG CGATTTTGTA AAGGGTGATG GTAGTGGATG TGTTTCAATT TATGGACTTA AGCTTGATGA TGAAAACTTT
ATTGCCAAAC ACACTGGCCC CGGCCTTCTG TCGATGGCAA ATAGTGGACC AAATACCAAT GGTTGTCAGT TTTTTATAAC
ATGTGCAAAA TGCGACTGGC TTGACAACAA GCATGTCGTT TTCGGGAGAG TGCTTGGAGA TGGCCTTTTG GTTGTAAGGA
AGATTGAGAA CGTGGCAACT GGACCCAATA ACCGGCCAAA ATTAGCTTGC GTCATTGCAG AATGTGGTGA AATGTAAATT
TTAATGGAAC TTCGCCAACA AACAATTGTC CCCCAAACAA TTGGTTGAAT CCTCTACACC AACTGCACTC ACTATACAGA
TGTGGAATTT CTGCACTACA TGTATTTCTT TGTGCCCCCT TGAAACTAAA AATTCTTGCC ATGGGATTTT TTAATGTAAG
ACTGTATAAT TATATCAGCA TACAGTTGAG TAGCACAGCT AATTGAATGG TTATGCTCGA GGATGATAGA ATGATCTTAC
TTTGATGCAT CTTTTAGGCC CATAATCATC ATACATGTAC ACGCAGTTGT AGTATGCAAG TTAATAGTGT GTTAGAAATA
CTTCTAGAGC TACTTACTGG CACATTATTT CTAAAAGCAG GTGGAGTATA GAATATTTAT GGAGGAAAGA TTTACACAAT
ACTTGCCTAG T

>Vigan.06G021800.01
ATGGCTGCTT CGGTGGCAGG GAACGCGACC ACGAACACGA ACGCGGGTGT GGAGTGGCAC GTGCGTCCTC CAAACCCTAA
GAACCCAATC GTCTTCTTCG ATGTCACCAT CGGCAACATA CCTGCTGGTC GAATCAAGAT GGAACTCTTC GCCGACATTG
CGCCCAAAAC CGCCGAGAAT TTCAGGCAGT TCTGCACTGG GGAGTACAGA AAAGCTGGAC TTCCGGTTGG TTACAAGGGT
TGTCAATTTC ATAGAGTGAT TAAGGATTTT ATGATTCAAG CTGGCGATTT TGTAAAGGGT GATGGTAGTG GATGTGTTTC
AATTTATGGA CTTAAGCTTG ATGATGAAAA CTTTATTGCC AAACACACTG GCCCCGGCCT TCTGTCGATG GCAAATAGTG
GACCAAATAC CAATGGTTGT CAGTTTTTTA TAACATGTGC AAAATGCGAC TGGCTTGACA ACAAGCATGT CGTTTTCGGG
AGAGTGCTTG GAGATGGCCT TTTGGTTGTA AGGAAGATTG AGAACGTGGC AACTGGACCC AATAACCGGC CAAAATTAGC
TTGCGTCATT GCAGAATGTG GTGAAATGTA A

>Vigan.06G021800.01
MAASVAGNAT TNTNAGVEWH VRPPNPKNPI VFFDVTIGNI PAGRIKMELF ADIAPKTAEN FRQFCTGEYR KAGLPVGYKG
CQFHRVIKDF MIQAGDFVKG DGSGCVSIYG LKLDDENFIA KHTGPGLLSM ANSGPNTNGC QFFITCAKCD WLDNKHVVFG
RVLGDGLLVV RKIENVATGP NNRPKLACVI AECGEM*