GBrowse Details

Vigan.06G030100.01

Basic Information:
Name: Vigan.06G030100.01
Multiple alignment
Variant Information
Position: Chr06:3473156..3477669 (+ strand)
Length: 4514
Functional Information:
Description: Similar to uncharacterized protein. [C6SXU0, Glycine max]
GO: Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869)
InterPro: Proteinase inhibitor I25, cystatin (IPR000010)
Proteinase inhibitor I25, cystatin, conserved site (IPR018073)
Cystatin (IPR027214)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1540.80,649.05,105.73,79.34,50.80,188.14,53.08,74.79
Arabidopsis thaliana homolog: AT3G12490.2
Automatic updates:
Name: NM_001250514 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499887 (LOC100499887), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:3473156..3473345 (+ strand)
Length: 190
Type: five_prime_UTR
Position: Chr06:3473346..3473582 (+ strand)
Length: 237
Type: CDS
Position: Chr06:3475020..3475239 (+ strand)
Length: 220
Type: CDS
Position: Chr06:3475732..3475877 (+ strand)
Length: 146
Type: CDS
Position: Chr06:3477305..3477442 (+ strand)
Length: 138
Type: CDS
Position: Chr06:3477443..3477669 (+ strand)
Length: 227
Type: three_prime_UTR


>Vigan.06G030100.01
CATCTCCACA TCAAGTTGCT TAAGACTTAA GAAAAGCATT AAACACAGCA CCGAGAGTGA GAGAAGCAAC GACGCGGCGT
TCAAACTAAG CTACTAATAA ACGCATCGCA GTTATTACCC TCTGTTTGGC GCTACAAACG AAAACAAAGA AACCGACAAG
CGCTTTATTC CAGAACAAGA AGGAAACCGA ATGAGAGCAT CAACCTCTTC AATTCCCATT CCATCGTCGT CTTCGCGTTT
CTCCATCTTC TTCTTCCTTC TATTCGCGCT CCTCGCCCTT CGATCTTCAT CCGGCGACTG CTCCCACTTC CAACACCAGG
CACCGATGGC CACTGTCGGA GGCGTGCGTG ACTCCCCAGG GTCTCAGAAT AGCGTCGACA CTGAATCTCT CGCGCGATTC
GCGGTCGACG AGCACAACAA GAAGCAGAAT TCGCTTCTGG AGTTTGCTAG GGTTGTGAAG GCACAGGAAC AGGTTGTTGC
TGGTACCGTG CATCACCTTA CTCTCGAGGC TATTGAGGCT GGTGAGAAGA AGCTCTATGA AGCTAAGGTA TGGGTGAAAC
CATGGCTGAA CTTCAAAGAA CTTCAAGAGT TCAAGCCTGC CGGTGTTGCA TCACCATTTA CCTCTGCTGA CCTTGGTGTC
AAAAAGGATG GCCACAAATC GGGATGGCAA TCTGTGCCAA CACATGACCC TCAAGTTCAA GATGCAGCAA ATCATGCAAT
CAAGACAATC CAGCAAAGGT CTAATTCATT AGTACCCTAT GTGCTTCATG AGGTTGCTGA TGCAAAGGCT GAGGTGATTG
ATGATTTTGC CAAGTTTAAT CTGCTTCTCA AAGTCAAACG GGGAGACAAG GAAGAGAAGT TCAAGGTAGA AGTACACCAG
AACAACGAAG GGGCACTCCA TCTAAATCAG ATGGAACAAG ATCATTCCTA ATTCTGATCT GAAGGGTCGC TCCTAAACTA
TGCTTTTTCT TTTAATCAGT ATGGGGTGTA TGACTCTTAC TATCTATGTT ACCCATAAAT CATACACTTT TTGGGTATTG
TTCTTATCTC TCTCAACAAC TATATGTTGT GCTTACTCCT TTCTCTCTGA TGTTTGTATT GGCTTTATTT GTTATCTCTC
TCAACAACCA TGGTGTTATA TCTATACTAC TGTAATAT

>Vigan.06G030100.01
ATGAGAGCAT CAACCTCTTC AATTCCCATT CCATCGTCGT CTTCGCGTTT CTCCATCTTC TTCTTCCTTC TATTCGCGCT
CCTCGCCCTT CGATCTTCAT CCGGCGACTG CTCCCACTTC CAACACCAGG CACCGATGGC CACTGTCGGA GGCGTGCGTG
ACTCCCCAGG GTCTCAGAAT AGCGTCGACA CTGAATCTCT CGCGCGATTC GCGGTCGACG AGCACAACAA GAAGCAGAAT
TCGCTTCTGG AGTTTGCTAG GGTTGTGAAG GCACAGGAAC AGGTTGTTGC TGGTACCGTG CATCACCTTA CTCTCGAGGC
TATTGAGGCT GGTGAGAAGA AGCTCTATGA AGCTAAGGTA TGGGTGAAAC CATGGCTGAA CTTCAAAGAA CTTCAAGAGT
TCAAGCCTGC CGGTGTTGCA TCACCATTTA CCTCTGCTGA CCTTGGTGTC AAAAAGGATG GCCACAAATC GGGATGGCAA
TCTGTGCCAA CACATGACCC TCAAGTTCAA GATGCAGCAA ATCATGCAAT CAAGACAATC CAGCAAAGGT CTAATTCATT
AGTACCCTAT GTGCTTCATG AGGTTGCTGA TGCAAAGGCT GAGGTGATTG ATGATTTTGC CAAGTTTAAT CTGCTTCTCA
AAGTCAAACG GGGAGACAAG GAAGAGAAGT TCAAGGTAGA AGTACACCAG AACAACGAAG GGGCACTCCA TCTAAATCAG
ATGGAACAAG ATCATTCCTA A

>Vigan.06G030100.01
MRASTSSIPI PSSSSRFSIF FFLLFALLAL RSSSGDCSHF QHQAPMATVG GVRDSPGSQN SVDTESLARF AVDEHNKKQN
SLLEFARVVK AQEQVVAGTV HHLTLEAIEA GEKKLYEAKV WVKPWLNFKE LQEFKPAGVA SPFTSADLGV KKDGHKSGWQ
SVPTHDPQVQ DAANHAIKTI QQRSNSLVPY VLHEVADAKA EVIDDFAKFN LLLKVKRGDK EEKFKVEVHQ NNEGALHLNQ
MEQDHS*