GBrowse Details

Vigan.06G030200.01

Basic Information:
Name: Vigan.06G030200.01
Multiple alignment
Variant Information
Position: Chr06:3479150..3484489 (- strand)
Length: 5340
Functional Information:
Description: Similar to Nuclear transcription factor Y subunit C8. [I3TAY5, Medicago truncatula]
GO: Cellular Component: intracellular (GO:0005622)
Molecular Function: sequence-specific DNA binding (GO:0043565)
Molecular Function: protein heterodimerization activity (GO:0046982)
InterPro: Transcription factor CBF/NF-Y/archaeal histone (IPR003958)
Histone-fold (IPR009072)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:63.44,56.19,19.38,28.69,57.00,35.00,29.32,18.92
Arabidopsis thaliana homolog: AT3G12480.1
Automatic updates:
Name: NM_001363970 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max class 2 transcription repressor NC2 alpha 4 (LOC100814712), mRNA.
PubMed ID: 25542200 NCBI(pubmed)
18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:3479150..3479730 (- strand)
Length: 581
Type: three_prime_UTR
Position: Chr06:3479731..3480192 (- strand)
Length: 462
Type: CDS
Position: Chr06:3480890..3480947 (- strand)
Length: 58
Type: CDS
Position: Chr06:3481047..3481175 (- strand)
Length: 129
Type: CDS
Position: Chr06:3482414..3482507 (- strand)
Length: 94
Type: CDS
Position: Chr06:3482604..3482676 (- strand)
Length: 73
Type: CDS
Position: Chr06:3484129..3484161 (- strand)
Length: 33
Type: CDS
Position: Chr06:3484162..3484489 (- strand)
Length: 328
Type: five_prime_UTR


>Vigan.06G030200.01
ATTATCTCTC AACACGTCAC CGTTTTGACT CCTTCCTTTT AACACACTCT CACCTTCTTC TGCCTACATG CTTTACATCT
ATTGGGCGGT GACACGATTC CTGTCAATGG CATGTATTTG TAACAAAACC CTTGCTGAGG CATATCTCGT TGAATGAATC
CTTGAGAGAG AGTGGCCTTT GGATCTGAAA TGGGTTTCTT CGATTTCATC GTGTTGATGT TGGGGTCACT CTTTTTGTTC
AAAGCTTTCG ATTTTGCTTT TTTGATCTCT CTCTTCTGCT CCATTTGATT CCCCCAATTC TTCAGTGTTC TAACCCTAAT
CTGTTGCCAT GAGGAAGAAG CTCGATACCC GTTTCCCTGC TGCTCGGATA AAGAAGATAA TGCAAGCAGA TGAGGATGTT
GGAAAGATAG CACTGGCTGT TCCTGTTTTA GTTTCTAAAG CTCTAGAACT ATTTTTGCAA GATCTTTGTG ACCGTACTTA
TGAAATAACT CTTCAAAGAG GAGCAAAGAC CATGAATTCG TTGCATTTGA AACATTGTGT ACAAAGCTAT AATGTCTTTG
ACTTTCTGAG GGACGTTGTT AGCAGAGTTC CTGATTACGG TCATGGTCAT GGCCATGCTG AGGCTGGTGC TGATGATCGG
GCCATTTCAA AAAGAAGGAA AGCTGTTGGT GATGATTGTA ATGACAGTGA TGAAGAGGTT AAGAGAAGCA AGATGCAAGA
GTTGAGCCAC ACTGGCAGTA CTGGTAGGGG AAGAGGCCGG GGTAGAGGTA GAGGCCGTGG CCGAGGGCGA CCACCTTTAG
TAAGAGACAC ATATCATCAG GATGCTGAAT CTGAGCCATG CCCCTCTGTT CAGCCGAGCA ACCAACAAAG TGCTATCCCA
AGTGTTGCAG TGGACAGTGG TTCTGAGTCA AAAGATATAC CAAAGGAGGA GAATGTTGCA GCTCCTGTTG TAAGCGCTGA
TTCACTCCGA AACATTGACC TGAATGCCAT TACGAATGAA AATGATGACA AAAAAGCTAG CGTGGCAGAA CCTCCTTCAA
CAGAGGGCAA GCATGAAGAG ATTCTGGGGT GGCCCCTTTC TGATGTGGAC AAGATGGCCA TTGATTCGAC ACAGCTTGCG
CAGCTGAGTA GGCCATTAGA AGAGGAGGAG GAAGATTATG ACGAGGAGGA GGGGTAAATA TTATAGTCTT TGGGTGATTA
GATTAGTGAA AAAGCTCATG ATAACTGTAG AATAAGTACA TACTAGTGTT ATGATTATGA GTACCCACTA GCTGTCAAAA
CATGTCCCAT GTTGGCGGCT GGCTGAAAAA AGGGTCTGAA TGTACCTTCA GATCCCCTTT TTATTAATCC GGTTTGTATG
TGTAGCTGAT GATGTATCGT TCAATTGACC AGTAATGTTA GCTTTGTACT CTTAGGTCTA CAATGTATGT ATATCACAAT
TCTAGATGGA GTGAAATTTA TGCATGCAAC CTTATTTAAT ATTGCTGCAG AAACTTTGAC TATTTGCCAG TCTCTCAGCT
AATGTCTATC CCTTTTTGGC AAAGATGGAT TGGCATATCT ATACAAGCAG GGCTGGCTAA AGTAGTTTTG TATCATTTGC
ATTGCTTCAG AATTAGATAA ATAGTTATTC TGGTGAAGTT TTACAAAAAT CAAAACAGTG AAGTCTCTGT TATAAAAACT
TTGTTGAGTT TGTTTATTTG AGTTTTTTAT GTTTTTAAAA CTCATCACAA AAGCATCGGT AGAAAAAGCA GTCTGACA

>Vigan.06G030200.01
ATGAGGAAGA AGCTCGATAC CCGTTTCCCT GCTGCTCGGA TAAAGAAGAT AATGCAAGCA GATGAGGATG TTGGAAAGAT
AGCACTGGCT GTTCCTGTTT TAGTTTCTAA AGCTCTAGAA CTATTTTTGC AAGATCTTTG TGACCGTACT TATGAAATAA
CTCTTCAAAG AGGAGCAAAG ACCATGAATT CGTTGCATTT GAAACATTGT GTACAAAGCT ATAATGTCTT TGACTTTCTG
AGGGACGTTG TTAGCAGAGT TCCTGATTAC GGTCATGGTC ATGGCCATGC TGAGGCTGGT GCTGATGATC GGGCCATTTC
AAAAAGAAGG AAAGCTGTTG GTGATGATTG TAATGACAGT GATGAAGAGG TTAAGAGAAG CAAGATGCAA GAGTTGAGCC
ACACTGGCAG TACTGGTAGG GGAAGAGGCC GGGGTAGAGG TAGAGGCCGT GGCCGAGGGC GACCACCTTT AGTAAGAGAC
ACATATCATC AGGATGCTGA ATCTGAGCCA TGCCCCTCTG TTCAGCCGAG CAACCAACAA AGTGCTATCC CAAGTGTTGC
AGTGGACAGT GGTTCTGAGT CAAAAGATAT ACCAAAGGAG GAGAATGTTG CAGCTCCTGT TGTAAGCGCT GATTCACTCC
GAAACATTGA CCTGAATGCC ATTACGAATG AAAATGATGA CAAAAAAGCT AGCGTGGCAG AACCTCCTTC AACAGAGGGC
AAGCATGAAG AGATTCTGGG GTGGCCCCTT TCTGATGTGG ACAAGATGGC CATTGATTCG ACACAGCTTG CGCAGCTGAG
TAGGCCATTA GAAGAGGAGG AGGAAGATTA TGACGAGGAG GAGGGGTAA

>Vigan.06G030200.01
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK TMNSLHLKHC VQSYNVFDFL
RDVVSRVPDY GHGHGHAEAG ADDRAISKRR KAVGDDCNDS DEEVKRSKMQ ELSHTGSTGR GRGRGRGRGR GRGRPPLVRD
TYHQDAESEP CPSVQPSNQQ SAIPSVAVDS GSESKDIPKE ENVAAPVVSA DSLRNIDLNA ITNENDDKKA SVAEPPSTEG
KHEEILGWPL SDVDKMAIDS TQLAQLSRPL EEEEEDYDEE EG*