VIGGS:GBrowse

Vigan.06G035900.01

Basic Information:

Name:	Vigan.06G035900.01 Multiple alignment Variant Information
Position:	Chr06:4147299..4153893 (- strand)
Length:	6595

Functional Information:

Description:	Similar to Proteasome subunit alpha type. [V7AHS3, Phaseolus vulgaris]
GO:	Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
	Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
	Cellular Component: proteasome core complex (GO:0005839)
	Cellular Component: proteasome core complex, alpha-subunit complex (GO:0019773)
	Molecular Function: endopeptidase activity (GO:0004175)
	Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro:	Proteasome alpha-subunit, N-terminal domain (IPR000426)
	Proteasome, subunit alpha/beta (IPR001353)
	Proteasome A-type subunit (IPR023332)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:190.65,172.08,97.08,64.80,129.90,164.75,100.48,78.78
Arabidopsis thaliana homolog:	AT5G35590.1

Automatic updates:

Name:	NM_001251322 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max proteasome subunit alpha type-6 (PAA1), mRNA.
PubMed ID:	7681138 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:4147299..4147583 (- strand)
Length:	285
Type:	three_prime_UTR

Position:	Chr06:4147584..4147676 (- strand)
Length:	93
Type:	CDS

Position:	Chr06:4148272..4148331 (- strand)
Length:	60
Type:	CDS

Position:	Chr06:4149089..4149184 (- strand)
Length:	96
Type:	CDS

Position:	Chr06:4150097..4150179 (- strand)
Length:	83
Type:	CDS

Position:	Chr06:4150347..4150405 (- strand)
Length:	59
Type:	CDS

Position:	Chr06:4152010..4152106 (- strand)
Length:	97
Type:	CDS

Position:	Chr06:4152837..4152918 (- strand)
Length:	82
Type:	CDS

Position:	Chr06:4152995..4153089 (- strand)
Length:	95
Type:	CDS

Position:	Chr06:4153626..4153701 (- strand)
Length:	76
Type:	CDS

Position:	Chr06:4153702..4153893 (- strand)
Length:	192
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G035900.01
CAAAATGAAA CCCCCTTGTT TTCTTGAGTA GGAAGTTGAG ATCGACACTT TAATACCGGA AGAGCACCGT CTCCACTCTC
GACTTCTTCG TTGCACTTTC TCGAAAACCA ATACACCACT CTCGTCGCCG CCGTCATCGT CGTCGACCAT CGCAAGCGCT
GTCGCACTCC GCTGTCATCC GTTAGGGTTA AGATGAGTCG AGGAAGTGGA GGCGGATACG ATCGTCACAT CACTATTTTC
TCTCCCGAGG GACGCCTCTT TCAAGTTGAG TATGCTTTCA AGGCTGTTAA GGCTGCTGGA ATCACCTCAA TCGGTGTCCG
AGGAAAGGAT TCCATTTGTG TTGTTACTCA GAAGAAGGTT CCGGATAAGC TTTTGGACCA GACAAGTGTT ACACACCTCT
TTCCCATCAC AAAGTACCTT GGTTTGTTGG CGACTGGCAT GACAGCTGAT GCTAGGACAC TGGTCCAACA AGCAAGAAAT
GAAGCAGCTG AGTTTCGCTT TACATATGGA TATGAGATGC CTGTAGATGT GTTAGCTAGA TGGATTGCAG ACAAATCACA
AGTCTATACC CAACATGCAT ATATGAGACC ACTTGGAGTA GTTGCTATGG TTTTGGGTAT AGATGATGAA TACGGACCAC
AGCTTTACAA ATGTGATCCT GCTGGTCATT ACTTTGGTCA CAAGGCCACA AGTGCTGGAT TGAAGGACCA AGAGGCAATT
AATTTCTTGG AAAAGAAGAT GAAGAATGAC CCTTCATTTA CTTATGAGGA GACGGTGCAG ACTGCCATTT CTGCTCTCCA
ATCAGTTCTT CAGGAGGATT TTAAGGCCAC TGAGATTGAG GTTGGAGTGG TGCGAAAGGA TAATCCAGAA TTCAGAGTTC
TAACCACTGA GGAAATTGAT GAGCACTTGA CTGCAATAAG TGAGCGTGAC TGAGTTCTTA ATAGCATGTA ATTGTTCAAT
CTTTCTAATG CTAGATTAAA TTATGCATTT GCTTTCTCGG ATCACATTCA ACGAATTGAT TTCCTTGTGA TAATTTGATT
AGTATGTAAC CGAAGAATGT TGTTGAAGAT GGTATTTGCT TCCTATTACA AGTTTATTTG GGAGAACATT TTATGTTCAA
CCAATCTCTC CATACACTTT AAAAGAAGTT GGTGATTACG TAATGAAGTC ATGCATGGTG TTAAAAATTT TGGCCTTGCG
TGGAGATTTG AACTTCAA

[show][hide][copy]CDS

>Vigan.06G035900.01
ATGAGTCGAG GAAGTGGAGG CGGATACGAT CGTCACATCA CTATTTTCTC TCCCGAGGGA CGCCTCTTTC AAGTTGAGTA
TGCTTTCAAG GCTGTTAAGG CTGCTGGAAT CACCTCAATC GGTGTCCGAG GAAAGGATTC CATTTGTGTT GTTACTCAGA
AGAAGGTTCC GGATAAGCTT TTGGACCAGA CAAGTGTTAC ACACCTCTTT CCCATCACAA AGTACCTTGG TTTGTTGGCG
ACTGGCATGA CAGCTGATGC TAGGACACTG GTCCAACAAG CAAGAAATGA AGCAGCTGAG TTTCGCTTTA CATATGGATA
TGAGATGCCT GTAGATGTGT TAGCTAGATG GATTGCAGAC AAATCACAAG TCTATACCCA ACATGCATAT ATGAGACCAC
TTGGAGTAGT TGCTATGGTT TTGGGTATAG ATGATGAATA CGGACCACAG CTTTACAAAT GTGATCCTGC TGGTCATTAC
TTTGGTCACA AGGCCACAAG TGCTGGATTG AAGGACCAAG AGGCAATTAA TTTCTTGGAA AAGAAGATGA AGAATGACCC
TTCATTTACT TATGAGGAGA CGGTGCAGAC TGCCATTTCT GCTCTCCAAT CAGTTCTTCA GGAGGATTTT AAGGCCACTG
AGATTGAGGT TGGAGTGGTG CGAAAGGATA ATCCAGAATT CAGAGTTCTA ACCACTGAGG AAATTGATGA GCACTTGACT
GCAATAAGTG AGCGTGACTG A

[show][hide][copy]PROTEIN

>Vigan.06G035900.01
MSRGSGGGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSICV VTQKKVPDKL LDQTSVTHLF PITKYLGLLA
TGMTADARTL VQQARNEAAE FRFTYGYEMP VDVLARWIAD KSQVYTQHAY MRPLGVVAMV LGIDDEYGPQ LYKCDPAGHY
FGHKATSAGL KDQEAINFLE KKMKNDPSFT YEETVQTAIS ALQSVLQEDF KATEIEVGVV RKDNPEFRVL TTEEIDEHLT
AISERD*