GBrowse Details

Vigan.06G037400.01

Basic Information:
Name: Vigan.06G037400.01
Multiple alignment
Variant Information
Position: Chr06:4336466..4338770 (- strand)
Length: 2305
Functional Information:
Description: Similar to Cytokinin-specific binding protein. [Q9ZWP8, Vigna radiata]
GO: Biological Process: defense response (GO:0006952)
Biological Process: response to biotic stimulus (GO:0009607)
InterPro: Bet v I domain (IPR000916)
START-like domain (IPR023393)
Bet v I type allergen (IPR024949)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.22,5.80,4.74,1.75,1.37,2.08,48.70,5.18
Automatic updates:
Name: NM_001376196 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata phytohormone-binding protein CSBP (CSBP), mRNA.
PubMed ID: 26177103 NCBI(pubmed)
9874249 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:4336466..4336921 (- strand)
Length: 456
Type: three_prime_UTR
Position: Chr06:4336922..4337208 (- strand)
Length: 287
Type: CDS
Position: Chr06:4338474..4338654 (- strand)
Length: 181
Type: CDS
Position: Chr06:4338655..4338770 (- strand)
Length: 116
Type: five_prime_UTR


>Vigan.06G037400.01
AAAAGCATAT TTTTCATATT TATATGTGGC TGAGATAAAA AAGATTCCCA TCGAAGTACT ACATATACAC ACATAGCAGT
GCAGTCTCTG TGTGAAAGCA CGTTTTGTTA AGAGCCATGG TAAAGGAATT CAACACCCAA ACAGAACTTA GTGTGAGATT
GGAAGCCCTT TGGGCAGTGC TATCTAAGGA TTTCATAACA GTGGTTCCAA AGGTACTTCC TCATATTGTG AAAGATGTGC
AAGTGATTGA AGGTGATGGA GGGGTTGGAA CAATCCTCAT CTTTAATTTT TTTCCTGACG TGTCACCAAG CTACCAAAGG
GAGGAGATCA CAGAGTTTGA TGAGAGTTCA CATGAAATAG GTTTGCAAGT GATTGAAGGA GGTTATCTAA GTCAAGGGTT
GTCATATTAC AAGACAACTT TTAAACTATC TGCAGTTGAA GAGGATAAGA CTTTGGTCAA CGTGAAAATC TCTTACGACC
ATGAATCCGA CATAGAAGAA AAGGTCACAC CTACGAAGAC ATCACAGTCC ACTTTATTCT ATCTTAGACG TCTAGAAAAA
TACCTGTCGA ATGGCTCTGC TTGAAGAAAA AACATTTATT GAAATATTAT ATAGAAAAAT AGAAAGAATG ATCAGATGTT
GTTTTTACTA TTTTTCTATT ATACTTATGA ATACATAAGT AAAAGGAGAC ATGAAAATAC ACTCTATTTT CTAAAGCCAA
ACATCTCCTA GTATTGTAAT ATATGTGGGT TAGAGTAGTT GCATCATTTT GGTTTTGAAT AATGTTTTAC TATTTTCAGT
CGAGTAAGAA AAACAATGTT AATTGGTCTT TGTAACATAA TTTGAGAGCT CTTTGTTACG ATCGAATTGA TTTTCTTATG
TGTTTGACGC ACTGTGTTTA CAATAATGAA TTTGAAGAAG AATGAGTGAA TAGATTTGAA GAGATTTAAG AGTAAATTGA
TTGTTATTCT TTTAAACAGA TTTGGAAGTA AGTAAGGGTG AATTTGAAAG TAAAGTGTTT GAAAATTACT GTAGGATTTG


>Vigan.06G037400.01
ATGGTAAAGG AATTCAACAC CCAAACAGAA CTTAGTGTGA GATTGGAAGC CCTTTGGGCA GTGCTATCTA AGGATTTCAT
AACAGTGGTT CCAAAGGTAC TTCCTCATAT TGTGAAAGAT GTGCAAGTGA TTGAAGGTGA TGGAGGGGTT GGAACAATCC
TCATCTTTAA TTTTTTTCCT GACGTGTCAC CAAGCTACCA AAGGGAGGAG ATCACAGAGT TTGATGAGAG TTCACATGAA
ATAGGTTTGC AAGTGATTGA AGGAGGTTAT CTAAGTCAAG GGTTGTCATA TTACAAGACA ACTTTTAAAC TATCTGCAGT
TGAAGAGGAT AAGACTTTGG TCAACGTGAA AATCTCTTAC GACCATGAAT CCGACATAGA AGAAAAGGTC ACACCTACGA
AGACATCACA GTCCACTTTA TTCTATCTTA GACGTCTAGA AAAATACCTG TCGAATGGCT CTGCTTGA

>Vigan.06G037400.01
MVKEFNTQTE LSVRLEALWA VLSKDFITVV PKVLPHIVKD VQVIEGDGGV GTILIFNFFP DVSPSYQREE ITEFDESSHE
IGLQVIEGGY LSQGLSYYKT TFKLSAVEED KTLVNVKISY DHESDIEEKV TPTKTSQSTL FYLRRLEKYL SNGSA*