GBrowse Details

Vigan.06G040800.01

Basic Information:
Name: Vigan.06G040800.01
Multiple alignment
Variant Information
Position: Chr06:4932387..4936397 (- strand)
Length: 4011
Functional Information:
Description: Similar to 50S ribosomal protein L13, chloroplastic-like. [XP_004516022.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L13 (IPR005822)
Ribosomal protein L13, bacterial-type (IPR005823)
Ribosomal protein L13, conserved site (IPR023563)
Ribosomal protein L13 domain (IPR023564)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.06,11.25,25.30,112.28,5.97,12.02,5.77,16.49
Arabidopsis thaliana homolog: AT1G78630.1
Automatic updates:
Name: NM_001248906 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L13 (LOC100305981), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:4932387..4932994 (- strand)
Length: 608
Type: three_prime_UTR
Position: Chr06:4932995..4933111 (- strand)
Length: 117
Type: CDS
Position: Chr06:4933612..4933782 (- strand)
Length: 171
Type: CDS
Position: Chr06:4935231..4935416 (- strand)
Length: 186
Type: CDS
Position: Chr06:4936043..4936291 (- strand)
Length: 249
Type: CDS
Position: Chr06:4936292..4936397 (- strand)
Length: 106
Type: five_prime_UTR


>Vigan.06G040800.01
CTTATATCTC CTAGTCCCAT ATCGCTCAAT CGCTAAACGT TATCCAAACA AAAGAAACAC TGAAGGAAGC CATATAGCGA
AAGAGATAGA GCGATAAAGC GAGACAATGG CGCTGCTGTG TGGTTCAACT TCTGTAACTC CGTTACTTTC CCACAAGAAC
GTGGTCGCAG CCTCTACAAA ATCTTCCTTT GGAGGCTTCC AATTGTCACT TCCAAAGCTT ACATTAACTT CTTCTGTTCG
AACCCTTTTA CCCTCAAATT CCCGTATCCG TTGTCAACAG GAATCTACCA CACCTGCCCC AGTCGAAGAC CCGCGTTTCG
CCTGCGTCGA GCCCGAACCC CGATTCAAAG GCCCGGACAT TTGGAACAAG AGCTGGTATC CAAAAGCTGC AGATCATGTA
AATACAGAGA AAACATGGTA TGTTGTTGAC GCTACAGATA AAGTTCTTGG AAGATTAGCT TCTACAATTG CTATTCACAT
CCGAGGGAAA AACTTAGCAA CCTACACACC CAGTGTGGAC ATGGGTGCAT TTGTAATTGT GGTAAATGCT GAAAAGATTG
CTGTATCTGG GAAAAAGAGG ACTCAAAAGC TTTATAGAAG ACACTCTGGA AGACCTGGTG GTATGACGGT GGAGACATTT
GCTCAGCTGC AAAACAGAAT TCCTGAAAGA ATTATTGAAC ATGCTGTTCG GGGCATGCTT CCAAAAGGGA GGCTTGGCAG
GAGACTATTC ACCCACCTGA AGGTTTACAA GGGCCCCGAT CATCCACATG CGGCACAAAA GCCCATTGAC TTGCCAATAA
GGGATAAGAG AATACAACTC CAGAAATAGG TCACAGTTGC CGTCGAGAAA ATGGAATGAT ATATGACAAT CGTAACTCTA
TCCATTTTGC AGAACATCGA GTTTCCTGCT TTGGCTTCCA CCTTGCTGAT GTCTTCCATT AATGTTTATA TTGTCTGTAG
AGGTAACTGA TTATTGTATT ATTTTGTTTG TGTTTAAGGT CCTTTGTTGA ATCTTCATAA TATTTTTGTT GTAGATTTGA
ATCTTAGTCA TGTCATATTT TTTAATATGC TTGAGTTTAT TGTCAGCTTT ATTATTTGAA GGAAACGTCC ATGCCTTTTA
TTTTTTTCTT TAATTGTTTA GACCCCAAAA TGGAAAGAAA AAAATGAATC GAAGAAAAGA AGATCGAAGT GGAGGTTATG
CCACTTTCTA CTAGCTCTAG TACTGTATGA TATTGCTTTG TCATGCATTT CATATATGTG TTTGACTACA GTAGATTTGG
ACTTAGAGAG AAGGATACAT TGAGAGAGTG TCTTTGTATT GCTTCTTGTA AAACTCAATC TATATAGTGC ATGTGCTTTC
AATCCCAGGT TGATTGAAAG AGACTAGATG TAGGCATTGA AGCGGAACCA GTATAAACCT TAGTGTGGTT CTTTCTA

>Vigan.06G040800.01
ATGGCGCTGC TGTGTGGTTC AACTTCTGTA ACTCCGTTAC TTTCCCACAA GAACGTGGTC GCAGCCTCTA CAAAATCTTC
CTTTGGAGGC TTCCAATTGT CACTTCCAAA GCTTACATTA ACTTCTTCTG TTCGAACCCT TTTACCCTCA AATTCCCGTA
TCCGTTGTCA ACAGGAATCT ACCACACCTG CCCCAGTCGA AGACCCGCGT TTCGCCTGCG TCGAGCCCGA ACCCCGATTC
AAAGGCCCGG ACATTTGGAA CAAGAGCTGG TATCCAAAAG CTGCAGATCA TGTAAATACA GAGAAAACAT GGTATGTTGT
TGACGCTACA GATAAAGTTC TTGGAAGATT AGCTTCTACA ATTGCTATTC ACATCCGAGG GAAAAACTTA GCAACCTACA
CACCCAGTGT GGACATGGGT GCATTTGTAA TTGTGGTAAA TGCTGAAAAG ATTGCTGTAT CTGGGAAAAA GAGGACTCAA
AAGCTTTATA GAAGACACTC TGGAAGACCT GGTGGTATGA CGGTGGAGAC ATTTGCTCAG CTGCAAAACA GAATTCCTGA
AAGAATTATT GAACATGCTG TTCGGGGCAT GCTTCCAAAA GGGAGGCTTG GCAGGAGACT ATTCACCCAC CTGAAGGTTT
ACAAGGGCCC CGATCATCCA CATGCGGCAC AAAAGCCCAT TGACTTGCCA ATAAGGGATA AGAGAATACA ACTCCAGAAA
TAG

>Vigan.06G040800.01
MALLCGSTSV TPLLSHKNVV AASTKSSFGG FQLSLPKLTL TSSVRTLLPS NSRIRCQQES TTPAPVEDPR FACVEPEPRF
KGPDIWNKSW YPKAADHVNT EKTWYVVDAT DKVLGRLAST IAIHIRGKNL ATYTPSVDMG AFVIVVNAEK IAVSGKKRTQ
KLYRRHSGRP GGMTVETFAQ LQNRIPERII EHAVRGMLPK GRLGRRLFTH LKVYKGPDHP HAAQKPIDLP IRDKRIQLQK
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