GBrowse Details

Vigan.06G045900.01

Basic Information:
Name: Vigan.06G045900.01
Multiple alignment
Variant Information
Position: Chr06:5934785..5939656 (+ strand)
Length: 4872
Functional Information:
Description: Similar to Uncharacterized protein. [K7KWZ7, Glycine max]
GO: Molecular Function: catalytic activity (GO:0003824)
InterPro: Protein phosphatase 2C (PP2C)-like domain (IPR001932)
Protein phosphatase 2C (IPR015655)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1968.20,130.75,40.27,34.25,30.10,56.47,16.88,68.93
Automatic updates:
Name: NM_001255873 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative protein phosphatase 2C (LOC100787942), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:5934785..5935219 (+ strand)
Length: 435
Type: five_prime_UTR
Position: Chr06:5935220..5935252 (+ strand)
Length: 33
Type: CDS
Position: Chr06:5937042..5937287 (+ strand)
Length: 246
Type: CDS
Position: Chr06:5937760..5938036 (+ strand)
Length: 277
Type: CDS
Position: Chr06:5939055..5939209 (+ strand)
Length: 155
Type: CDS
Position: Chr06:5939339..5939476 (+ strand)
Length: 138
Type: CDS
Position: Chr06:5939477..5939656 (+ strand)
Length: 180
Type: three_prime_UTR


>Vigan.06G045900.01
ATTGCTTACT TTTTCTGAAG ACGATAACTT GATAAGACCG TACTTTATTA TGATTAACTC AAAAGCAGAG AAAGCGAAGC
CCTACGGAGA AAACTGATCA ACGAGACGGC GCCACGTGTA GGCGCGAACG CGTCATTGTA ATTGCGACGT ACGCGGCATG
GTATTGGGAA GTAACAGGAA GTCGTGTCAA CGCGACATCA TCAACTTTCA CAAAACAACA CAACACAGCA AATCTCACTC
TCCTTTTTTC CTTTTTCTTC CTCAAAATCC CTTCTTCCTT CGCTGCCTCT TCACCTCTTC GCCTCTTCGC TTCTCTGTCT
TCTTCTTACT CTCTCCCTCA TTGCGTCAAC TAAAAAATAT ACATAAAAAA CACCACACCC TTCTCTACGT GGCCACTCTC
ACTTTCCTTT TAAATCTTTA TTTAAGCCCT TCACTATGAC CGGCAAAGAA ATCCTTCACA AGATGAAGGA AAAAGTTTTG
GGGCCATCTG ATTCTGATTC AGGTAAAGGA AAGAGCAAGA TGAAGAAGCA CATTACTCAT GGCTTTCACT TGGTAAAGGG
AAGATCTGGT CATGCCATGG AAGACTATGT TGTTGCTCAG TTTAAGCAAG TTGATAACAA TGAATTGGGT TTATTTGCTA
TATTCGATGG CCACTCAGGT CAAAGTGTGC CTGATTACTT GAGAACTCAT TTGTTTGATA ACATCTTGAA AGAGCCTAAC
TTCTGGACAG AACCTGCTGA TGCTGTGAAG AGGGCATATA GTATAACTGA TTCTACTATT TTAGACAAAT CAGGTGAACT
GGGTCGAGGG GGTTCAACTG CAGTTACTGC AATATTGATC AACTGTCAGA AGTTAGTAGT GGCCAATATT GGAGATTCCA
GGGCTGTCTT GTGCCAGAAT GGCCAGGCCA AACAACTATC AGTGGATCAT GAGCCAAGTG TAGAAAGTGA GGATATAAAA
AACAGAGGTG GTTTTGTGTC AAACTTCCCA GGGGACGTTC CACGAGTTGA TGGTCAGTTG GCAGTGTCAA GGGCATTCGG
TGACAAAAGC CTGAAGGTAC ACTTGAGCTC AGAACCACAT GTGATTGTGG AGTTGATAGG CGATGATGCA GAGTTTGTTA
TCTTAGCCAG TGATGGGTTA TGGAAGGTGA TGACAAATCA AGAAGCAGTT GATGCAATCA GAGATGTTAA GGATGCTCGC
TCTGCAGCAA AGATCCTTAC TGAAGAAGCA CGTAACAGGA AAAGCTCAGA TGATATCTCT TGTGTTGTTG TGAAATTTCA
GTGATCAAAT GACTCAATTA GTAGAACTTG AAAGTGTATA TTTGGATAAA TGATGATACA CCCTTGTGGT GTTATTGCAT
GTTATAGCAT TCCGTGTGCA ATATTTTCTG TTCATGTTTG ATGAAATAAT ATGAAAAGGA TGTAGATTTG GATTGTATTA
ATAAAAATAA TTTTTATGAT TGCA

>Vigan.06G045900.01
ATGACCGGCA AAGAAATCCT TCACAAGATG AAGGAAAAAG TTTTGGGGCC ATCTGATTCT GATTCAGGTA AAGGAAAGAG
CAAGATGAAG AAGCACATTA CTCATGGCTT TCACTTGGTA AAGGGAAGAT CTGGTCATGC CATGGAAGAC TATGTTGTTG
CTCAGTTTAA GCAAGTTGAT AACAATGAAT TGGGTTTATT TGCTATATTC GATGGCCACT CAGGTCAAAG TGTGCCTGAT
TACTTGAGAA CTCATTTGTT TGATAACATC TTGAAAGAGC CTAACTTCTG GACAGAACCT GCTGATGCTG TGAAGAGGGC
ATATAGTATA ACTGATTCTA CTATTTTAGA CAAATCAGGT GAACTGGGTC GAGGGGGTTC AACTGCAGTT ACTGCAATAT
TGATCAACTG TCAGAAGTTA GTAGTGGCCA ATATTGGAGA TTCCAGGGCT GTCTTGTGCC AGAATGGCCA GGCCAAACAA
CTATCAGTGG ATCATGAGCC AAGTGTAGAA AGTGAGGATA TAAAAAACAG AGGTGGTTTT GTGTCAAACT TCCCAGGGGA
CGTTCCACGA GTTGATGGTC AGTTGGCAGT GTCAAGGGCA TTCGGTGACA AAAGCCTGAA GGTACACTTG AGCTCAGAAC
CACATGTGAT TGTGGAGTTG ATAGGCGATG ATGCAGAGTT TGTTATCTTA GCCAGTGATG GGTTATGGAA GGTGATGACA
AATCAAGAAG CAGTTGATGC AATCAGAGAT GTTAAGGATG CTCGCTCTGC AGCAAAGATC CTTACTGAAG AAGCACGTAA
CAGGAAAAGC TCAGATGATA TCTCTTGTGT TGTTGTGAAA TTTCAGTGA

>Vigan.06G045900.01
MTGKEILHKM KEKVLGPSDS DSGKGKSKMK KHITHGFHLV KGRSGHAMED YVVAQFKQVD NNELGLFAIF DGHSGQSVPD
YLRTHLFDNI LKEPNFWTEP ADAVKRAYSI TDSTILDKSG ELGRGGSTAV TAILINCQKL VVANIGDSRA VLCQNGQAKQ
LSVDHEPSVE SEDIKNRGGF VSNFPGDVPR VDGQLAVSRA FGDKSLKVHL SSEPHVIVEL IGDDAEFVIL ASDGLWKVMT
NQEAVDAIRD VKDARSAAKI LTEEARNRKS SDDISCVVVK FQ*