VIGGS:GBrowse

Vigan.06G049600.01

Basic Information:

Name:	Vigan.06G049600.01 Multiple alignment Variant Information
Position:	Chr06:6372304..6376155 (+ strand)
Length:	3852

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LSW2, Glycine max]
GO:	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: protein binding (GO:0005515)
	Molecular Function: zinc ion binding (GO:0008270)
InterPro:	Bromo adjacent homology (BAH) domain (IPR001025)
	Zinc finger, PHD-type (IPR001965)
	Zinc finger, FYVE/PHD-type (IPR011011)
	Zinc finger, RING/FYVE/PHD-type (IPR013083)
	Zinc finger, PHD-type, conserved site (IPR019786)
	Zinc finger, PHD-finger (IPR019787)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:285.19,418.29,27.19,19.85,28.17,89.05,35.94,19.34

Automatic updates:

Name:	NM_001255699 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max BAH and coiled-coil domain-containing protein 1-like (LOC100810424), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001255849 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max BAH and coiled-coil domain-containing protein 1-like (LOC100800993), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:6372304..6372676 (+ strand)
Length:	373
Type:	five_prime_UTR

Position:	Chr06:6372677..6372749 (+ strand)
Length:	73
Type:	CDS

Position:	Chr06:6372879..6373221 (+ strand)
Length:	343
Type:	CDS

Position:	Chr06:6373782..6373850 (+ strand)
Length:	69
Type:	CDS

Position:	Chr06:6374626..6374764 (+ strand)
Length:	139
Type:	CDS

Position:	Chr06:6375806..6375832 (+ strand)
Length:	27
Type:	CDS

Position:	Chr06:6375833..6376155 (+ strand)
Length:	323
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G049600.01
GTAAGATTTG TTTCCAAAAG TCCACCATTA AACAAGAAAA TTATGGTTTT TCCACAAATG TGACATGTCA CAAGATGAAT
GGAGTGGATT AGGAAATTAC TTAGCGCAGA TCTCAGGACA AGAAAAATTT ACGAAGCAGT CAAATGTAAT GAACCGACCA
AGAATCGTCG CATTACATTC CCAAAAAGCC ACAGTAATAA AATCGCAGGC GAAGCGTCAC AGTCACTCCC TTCCCTCACA
GAAAAAAAGT GTCACCCCTC ACCCAAACCC ACACCTTAGG GTTCCTCAGT TCCTCTTCTT CTCCTTTTAA CCCAACAACA
AGCCCTCTGA AAAAAAAAAT TCCTCATTCC CCAAAACACC CTTCGCGCAC CGCATGGCGA AAACGAGGCC AGGCAGAAAG
GACTTGGACT CGTACACCAT AAGAGGAACC AACAAGGTCG TCCGAGCCGG TGATTGCGTT CTGATGCGGC CATCGGACAC
GTCGAAGCCC CCTTACGTGG CGCGCGTGGA GAAGATCGAG CAGGACAACA GGAACAACGT GAAGGTGCGT GTGAGGTGGT
ACTACAGACC CGAAGAGTCC ATTGGGGGTC GCAGACAGTT CCATGGTGCC AAAGAGCTTT TTCTCTCCGA CCACTATGAT
GTGCAGAGTG CTCACACCAT AGAAGGAAAA TGCGTAGTAC ACTCTTTCAA GAACTACACC AAGCTGGAGA ATGTGGGTTC
TGAGGATTAC TATTGTAGAT TTGAGTACAA GGCTGCCACT GGGGCTTTCA CTCCTGACCG TGTTGCTGTG TATTGCAAGT
GTGAGATGCC ATATAACCCG GATGACCTCA TGGTACAATG TGAAGGGTGC AAGGATTGGT ATCATCCTGC TTGTGTGGGC
ATGACCATCG AAGAAGCAAA GAAATTAGAT CATTTTGTGT GTTCAGAATG TTCATCTGAT GATGATATGA AGAAACCGCA
AGCTACATTT TCTGCATCAC CAGGAGCCGA TGGCAAGGTG GAGCCCAAGC GGCGAAAGAG ATGACCATAA TGCAGTAGTA
ACCTTGTTTG GAGGCGTGAG TGACTCTTGC TGAATTTGGG TGGCACTCTA TGGTAGCTTT TGTGTGTTGT ACAGCTTCAT
CTAGAGGCTA TGAACATTTC ATTATGTATC TGACTTAGCT TATATTATGT ATCTATTGGT CGTAGATTTT ATAACTGTGA
CATTCCCTCA AGTGAATTCC GATCCAAGTG TTTATTATTC TTCAGATGAT GACATCAAAA CCTAAAATAC TAAGCACAGA
GAAGCGGTTA GTTTTAAATG TTGGTTCGTC TTTAGCACTT AGCTTTTTGT TCCTCCCTAT TGCTCAC

[show][hide][copy]CDS

>Vigan.06G049600.01
ATGGCGAAAA CGAGGCCAGG CAGAAAGGAC TTGGACTCGT ACACCATAAG AGGAACCAAC AAGGTCGTCC GAGCCGGTGA
TTGCGTTCTG ATGCGGCCAT CGGACACGTC GAAGCCCCCT TACGTGGCGC GCGTGGAGAA GATCGAGCAG GACAACAGGA
ACAACGTGAA GGTGCGTGTG AGGTGGTACT ACAGACCCGA AGAGTCCATT GGGGGTCGCA GACAGTTCCA TGGTGCCAAA
GAGCTTTTTC TCTCCGACCA CTATGATGTG CAGAGTGCTC ACACCATAGA AGGAAAATGC GTAGTACACT CTTTCAAGAA
CTACACCAAG CTGGAGAATG TGGGTTCTGA GGATTACTAT TGTAGATTTG AGTACAAGGC TGCCACTGGG GCTTTCACTC
CTGACCGTGT TGCTGTGTAT TGCAAGTGTG AGATGCCATA TAACCCGGAT GACCTCATGG TACAATGTGA AGGGTGCAAG
GATTGGTATC ATCCTGCTTG TGTGGGCATG ACCATCGAAG AAGCAAAGAA ATTAGATCAT TTTGTGTGTT CAGAATGTTC
ATCTGATGAT GATATGAAGA AACCGCAAGC TACATTTTCT GCATCACCAG GAGCCGATGG CAAGGTGGAG CCCAAGCGGC
GAAAGAGATG A

[show][hide][copy]PROTEIN

>Vigan.06G049600.01
MAKTRPGRKD LDSYTIRGTN KVVRAGDCVL MRPSDTSKPP YVARVEKIEQ DNRNNVKVRV RWYYRPEESI GGRRQFHGAK
ELFLSDHYDV QSAHTIEGKC VVHSFKNYTK LENVGSEDYY CRFEYKAATG AFTPDRVAVY CKCEMPYNPD DLMVQCEGCK
DWYHPACVGM TIEEAKKLDH FVCSECSSDD DMKKPQATFS ASPGADGKVE PKRRKR*