GBrowse Details

Vigan.06G049700.01

Basic Information:
Name: Vigan.06G049700.01
Multiple alignment
Variant Information
Position: Chr06:6461389..6469222 (+ strand)
Length: 7834
Functional Information:
Description: Similar to Uncharacterized protein. [K7KWX5, Glycine max]
GO: Biological Process: cellular amino acid metabolic process (GO:0006520)
Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: transaminase activity (GO:0008483)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Aminotransferase, class I/classII (IPR004839)
Tyrosine/nicotianamine aminotransferase (IPR005958)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
Pyridoxal phosphate-dependent transferase (IPR015424)
Tyrosine transaminase (IPR021178)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:167.44,25.76,20.32,24.45,72.58,283.34,1.84,2.06
Arabidopsis thaliana homolog: AT5G53970.1
Automatic updates:
Name: DQ006809 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula tyrosine aminotransferase mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001251479 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tyrosine aminotransferase (LOC732650), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:6461389..6461678 (+ strand)
Length: 290
Type: five_prime_UTR
Position: Chr06:6461679..6461956 (+ strand)
Length: 278
Type: CDS
Position: Chr06:6463098..6463437 (+ strand)
Length: 340
Type: CDS
Position: Chr06:6463547..6463765 (+ strand)
Length: 219
Type: CDS
Position: Chr06:6467629..6467688 (+ strand)
Length: 60
Type: CDS
Position: Chr06:6468170..6468325 (+ strand)
Length: 156
Type: CDS
Position: Chr06:6468425..6468518 (+ strand)
Length: 94
Type: CDS
Position: Chr06:6468926..6469044 (+ strand)
Length: 119
Type: CDS
Position: Chr06:6469045..6469222 (+ strand)
Length: 178
Type: three_prime_UTR


>Vigan.06G049700.01
ATTCCTTCTT GTGACCGTAC CAAAACAATA AAGCGATAGT AAATGTAAAA TGTCAAGTTG ACATGTTAGC CAAGATGATT
AGGTTTCTTC CACATAATAT GCTAAAGAAA ACCATTAAGG TATATTTTGA CACGTAACAA GGTTTGTACG ACTGTCACGC
AACTATATAA ACCGCCAAAA CCTTTGTTTC CATGCTCAGA AAAACCACAT AACGTGTGGT GTGTGGGAAA CTAAACTCAG
AATTCTCCAC TGGGCCTTCA CAAATCTGAA CAAGGCAGAG GCTTCAGAGC ATGGACAACA ACTGCAGCAA CATCATCCAC
CACCAGCATC ATGAAACCAG AGCAACTTCC ACCATCACCA TTAAGGGCAT TCTCAGCCTT CTAATGGAAA ACATTGATGA
GAATTTGGAT GGTGGAAGCA AGAGAGTTAT TTCTCTGGGA ATGGGTGACC CAACACTCAC CACATTATTC CACACACCTA
AGGTTGTTGA AGAAGCTGTT GCTGACTCTC TTCACTCTCA CAAGTTTCAT GGCTATGCTC CCACTGCTGG TCTGCTCCAG
GCTAGAATAG CAATTGCTGA ATATCTATCT CGTGACCTTC CTTACCAGTT ATCAAGTGAT GACGTTTTCA TCACTTCTGG
ATGCACACAA GCCATTGATG TTTCAGTGGC GATGCTTGCT CGCCCCGGTG CAAATATCTT GCTTCCAAGG CCAGGCTTCC
CAATCTATGA ACTCAGTGCT GCATTTAGAG GGGTTGAAGT GAGGCATTAC GATCTGCTTC CAGAGAAAGG TTGGGAGGTT
GATCTAGATG CTGTTGAAGC TCTTGCTGAT CAGAACACGG TTGCATTGGT GATCATAAAT CCTGGGAATC CTTGTGGGAA
TGTGTACAGT TACCATCATT TGGAAAAGAT TGCTGAAACT GCAAAACGGG TTGGAACAAT TGTGATTTCT GATGAAGTAT
ATGGTCATCT TGCATTTGGG GCAAAGCCAT TTGTGCCAAT GGGAGTTTTT GGCTCAGTTG TTCCTGTTCT CACCCTTGGC
TCACTGTCTA AGAGATGGAT AGTTCCTGGA TGGAGGCTTG GTTGGTTCGT AACAAATGAT CCATCTAGCA CTTTTAGAGA
ACCAAAGGTC GTTGAGCGCA TTAAAAAGTA TTTTGATCTT CTGGGAGGTC CACCCACTTT CATCCAGGCA GCTGTACCTC
AGATAATTGC AAATACTGAA GAGACTTTCT TCAATAAAAC AATTGACAAT TTGAGGCATA CTGCAGATAT ATGTTGTACA
GAGATAAAGG ATATTCCATG CATTGTTTGC CCTTACAGAC CAGAAGGGTC CATGGCTATG ATGGTGAAAC TAAATCTTTC
ACTCCTAGAA GATATTAGTG ATGATATAGA CTTCTGTTTC AAACTTGCAA AAGAGGAATC TGTAATCATT CTTCCAGGAA
CCGCAGTTGG GCTAAAAGAT TGGCTTCGTA TTACCTTTGC TGCTGATCCA TGTGCTCTTG GAGAGGGTAT GAAAAGGATA
AAGTCTTTCT GTCAAAGGCA TGCAAGAAAA TTGTAAAAGC ATTAGTGAAT CCACAAATAA ATAAAATTAT TAGACTAATG
CTGGCCTTTT ACTGCAACAC TACACACGAT TTGCAGATTG TATTTCAATA TAGCATTCAG TCTCAGGAGA TATATTGCAA
CATTACTAAA ATACGGTATT CATATTTGTA ACATCCCAAA ATATAATATT AAAC

>Vigan.06G049700.01
ATGGACAACA ACTGCAGCAA CATCATCCAC CACCAGCATC ATGAAACCAG AGCAACTTCC ACCATCACCA TTAAGGGCAT
TCTCAGCCTT CTAATGGAAA ACATTGATGA GAATTTGGAT GGTGGAAGCA AGAGAGTTAT TTCTCTGGGA ATGGGTGACC
CAACACTCAC CACATTATTC CACACACCTA AGGTTGTTGA AGAAGCTGTT GCTGACTCTC TTCACTCTCA CAAGTTTCAT
GGCTATGCTC CCACTGCTGG TCTGCTCCAG GCTAGAATAG CAATTGCTGA ATATCTATCT CGTGACCTTC CTTACCAGTT
ATCAAGTGAT GACGTTTTCA TCACTTCTGG ATGCACACAA GCCATTGATG TTTCAGTGGC GATGCTTGCT CGCCCCGGTG
CAAATATCTT GCTTCCAAGG CCAGGCTTCC CAATCTATGA ACTCAGTGCT GCATTTAGAG GGGTTGAAGT GAGGCATTAC
GATCTGCTTC CAGAGAAAGG TTGGGAGGTT GATCTAGATG CTGTTGAAGC TCTTGCTGAT CAGAACACGG TTGCATTGGT
GATCATAAAT CCTGGGAATC CTTGTGGGAA TGTGTACAGT TACCATCATT TGGAAAAGAT TGCTGAAACT GCAAAACGGG
TTGGAACAAT TGTGATTTCT GATGAAGTAT ATGGTCATCT TGCATTTGGG GCAAAGCCAT TTGTGCCAAT GGGAGTTTTT
GGCTCAGTTG TTCCTGTTCT CACCCTTGGC TCACTGTCTA AGAGATGGAT AGTTCCTGGA TGGAGGCTTG GTTGGTTCGT
AACAAATGAT CCATCTAGCA CTTTTAGAGA ACCAAAGGTC GTTGAGCGCA TTAAAAAGTA TTTTGATCTT CTGGGAGGTC
CACCCACTTT CATCCAGGCA GCTGTACCTC AGATAATTGC AAATACTGAA GAGACTTTCT TCAATAAAAC AATTGACAAT
TTGAGGCATA CTGCAGATAT ATGTTGTACA GAGATAAAGG ATATTCCATG CATTGTTTGC CCTTACAGAC CAGAAGGGTC
CATGGCTATG ATGGTGAAAC TAAATCTTTC ACTCCTAGAA GATATTAGTG ATGATATAGA CTTCTGTTTC AAACTTGCAA
AAGAGGAATC TGTAATCATT CTTCCAGGAA CCGCAGTTGG GCTAAAAGAT TGGCTTCGTA TTACCTTTGC TGCTGATCCA
TGTGCTCTTG GAGAGGGTAT GAAAAGGATA AAGTCTTTCT GTCAAAGGCA TGCAAGAAAA TTGTAA

>Vigan.06G049700.01
MDNNCSNIIH HQHHETRATS TITIKGILSL LMENIDENLD GGSKRVISLG MGDPTLTTLF HTPKVVEEAV ADSLHSHKFH
GYAPTAGLLQ ARIAIAEYLS RDLPYQLSSD DVFITSGCTQ AIDVSVAMLA RPGANILLPR PGFPIYELSA AFRGVEVRHY
DLLPEKGWEV DLDAVEALAD QNTVALVIIN PGNPCGNVYS YHHLEKIAET AKRVGTIVIS DEVYGHLAFG AKPFVPMGVF
GSVVPVLTLG SLSKRWIVPG WRLGWFVTND PSSTFREPKV VERIKKYFDL LGGPPTFIQA AVPQIIANTE ETFFNKTIDN
LRHTADICCT EIKDIPCIVC PYRPEGSMAM MVKLNLSLLE DISDDIDFCF KLAKEESVII LPGTAVGLKD WLRITFAADP
CALGEGMKRI KSFCQRHARK L*