GBrowse Details

Vigan.06G053100.01

Basic Information:
Name: Vigan.06G053100.01
Multiple alignment
Variant Information
Position: Chr06:7358617..7365669 (+ strand)
Length: 7053
Functional Information:
Description: Similar to Phosphoenolpyruvate carboxylase, housekeeping isozyme. [Q02909, Glycine max]
GO: Biological Process: tricarboxylic acid cycle (GO:0006099)
Biological Process: carbon fixation (GO:0015977)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964)
InterPro: Pyruvate/Phosphoenolpyruvate kinase-like domain (IPR015813)
Phosphoenolpyruvate carboxylase, active site (IPR018129)
Phosphoenolpyruvate carboxylase (IPR021135)
Phosphoenolpyruvate carboxylase, bacterial/plant-type (IPR022805)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:327.94,56.56,30.87,22.64,28.84,24.80,79.00,25.50
Arabidopsis thaliana homolog: AT1G53310.1, AT2G42600.2, AT3G14940.1
Automatic updates:
Name: LC006107 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Gmppc2 mRNA for phosphoenolpyruvate carboxylase, complete cds, cultivar: Enrei.
PubMed ID: -
Status: Known Variant
Name: NM_001250673 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phosphoenolpyruvate carboxylase (PEPC16), mRNA.
PubMed ID: 15299132 NCBI(pubmed)
1450389 NCBI(pubmed)
Status: Known Variant
Name: NM_001317530 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phosphoenolpyruvate carboxylase, housekeeping isozyme-like (LOC100820574), mRNA.
PubMed ID: -
Status: Known Variant
Name: PQ763681 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula phosphoenolpyruvate carboxylase 2 (PEPC2) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: PQ763684 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula phosphoenolpyruvate carboxylase 5 (PEPC5) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:7358617..7358847 (+ strand)
Length: 231
Type: five_prime_UTR
Position: Chr06:7358848..7359015 (+ strand)
Length: 168
Type: CDS
Position: Chr06:7359699..7360090 (+ strand)
Length: 392
Type: CDS
Position: Chr06:7360189..7360273 (+ strand)
Length: 85
Type: CDS
Position: Chr06:7360658..7360880 (+ strand)
Length: 223
Type: CDS
Position: Chr06:7361263..7361366 (+ strand)
Length: 104
Type: CDS
Position: Chr06:7361453..7361546 (+ strand)
Length: 94
Type: CDS
Position: Chr06:7361649..7361803 (+ strand)
Length: 155
Type: CDS
Position: Chr06:7362157..7363155 (+ strand)
Length: 999
Type: CDS
Position: Chr06:7363777..7364163 (+ strand)
Length: 387
Type: CDS
Position: Chr06:7364958..7365254 (+ strand)
Length: 297
Type: CDS
Position: Chr06:7365255..7365669 (+ strand)
Length: 415
Type: three_prime_UTR


>Vigan.06G053100.01
ATTAGATCCT AATCATTGTT TGATCCATCA TGGCTGTCAC AAAAAAGTGA CATTTGTTTT CTTTGTAGCG GTGCATGCTG
TGTTTGTTTG TACTCGTTTT GCCTTATCTA CTTTCGTCAC TAAGTTTTCA TTGGGGATGT TGGTTTGATT TTCCTATGTT
GAAGTTTTGT TTTTTTGGAT CTTTAGGTGT GACCCTTTTA GTGTTTGCAG GTGGGGGGTA CATAGGCTGC AATGGCGAAC
AGGAACTTAG AAAAGATGGC ATCCATTGAT GCTCAGCTTC GGCTTTTGGT TCCTGCCAAA GTGAGTGAGG ATGATAAACT
GGTTGAGTAT GATGCTTTGC TCTTGGATCG GTTCCTTGAT ATTCTTCAGG ATTTACATGG GGAGGATCTG AAGGAAACGG
TTCAAGAGGT GTATGAACTT TCTGCTGAGT ATGAAGGAAA GCATGACCCA AAGAAACTGG AGGAACTTGG AAATCTGATA
ACTAGTTTGG ATGCTGGAGA TTCCATTGTT GTTGCCAAGT CGTTTTCCCA CATGCTTAAC TTGGCCAACT TAGCTGAAGA
GGTTCAAATC GCTCACCGCA GAAGGAACAA GTTGAAGAAA GGTGATTTTG CTGATGAGAA CAGTGCCACA ACTGAATCAG
ACATTGAAGA AACACTCAAG AAACTTGTGG TGGATATGAA GAAGTCTCCT CAGGAAGTTT TTGATGAGCT GAAAAACCAG
ACTGTTGATC TGGTTCTTAC TGCTCATCCT ACTCAATCAG TCCGTAGATC TCTGCTTCAA AAGCACGGAA GGATAAGAAA
TTGTTTAACT CAATTGTATG CCAAAGACAT CACTCCTGAT GATAAGCAGG AGCTTGATGA GGCTCTGCAG AGGGAGATTC
AAGCTGCATT CCGCACTGAT GAAATCAGAA GGACCCCTCC TACCCCACAA GATGAGATGA GGGCAGGGAT GAGTTACTTC
CATGAAACAA TCTGGAAAGG TGTACCTATG TTTCTTCGTC GTGTTGATAC AGCTTTGAAG AATATAGGGA TTAATGAACG
TGTCCCTTAT AACGCGCCTC TCATTCAATT TTCTTCTTGG ATGGGAGGAG ATCGTGATGG CAATCCAAGA GTAACTCCTG
AAGTGACCAG AGATGTTTGC TTATTGGCTA GAATGATGGC TGCTACCATG TACTATTCCC AGATAGAGGA TCTTATGTTT
GAACTGTCAA TGTGGCGCTG CAACGATGAG CTACAGGCCC GTGCAGATGA ACTTAACAGG TCTTCCAAGA AAAATGCAGT
TGCAAAACAC TACATAGAAT TTTGGAAAGC CATTCCTCCA AATGAACCAT ATCGTGTTTT ACTGGGTGAA GTAAGGAATA
GGCTTTACCA GACTCGTGAG CGCTCTCGCC ATTTGCTAGC TCATGGCTAC TCTGACATTC CAGAGGAAGA AACTTTCACC
AATGTTGAGG AGTTCTTGGA ACCCCTTGAA CTATGTTACA GGTCACTCTG TGCTTGTGGC GATCGTGCAA TTGCTGATGG
AAGCCTGCTA GATTTCTTGA GGCAAGTCTC TACTTTTGGA TTATCCCTTG TGAGGCTTGA CATAAGGCAA GAATCTGACC
GCCACACCGA TGTCTTAGAC GCCATCACCA AACACTTGGA AATAGGTTCA TACCAGGAAT GGTCAGAGGA AAAACGGCAG
CAATGGCTTT TATCTGAATT GAGTGGCAAG CGGCCTCTAT TTGGCCCTGA CCTTCCCAAA ACTGAAGAAA TCAGAGATGT
TTTGGACACA TTCCATGTGA TATCAGAGCT TCCTCCAGAC AATTTTGGAG CATACATCAT CTCAATGGCA ACCGCACCAT
CTGATGTGCT TGCTGTTGAG CTTCTGCAGC GTGAGTGTCA TGTCAAACAC CCTTTGAGAG TTGTGCCATT GTTTGAGAAG
TTGGACGATC TAGAAGCAGC ACCAGCTGCA TTGGCGCGGT TGTTCTCCAT AGACTGGTAC ATAAACAGGA TCAATGGGAA
GCAAGAAGTG ATGATAGGGT ATTCTGATTC AGGCAAGGAT GCTGGAAGGT TTTCTGCAGC TTGGCAGCTG TATAAGGCTC
AAGAGGATCT TATAAAGGTG GCTAAGGAGT ATGGTGTGAA GCTAACTATG TTCCACGGTC GAGGAGGGAC TGTTGGAAGA
GGAGGTGGCC CAACTCATCT TGCTATTTTG TCTCAGCCTC CGGATACAAT TCATGGATCA CTGCGTGTCA CTGTGCAAGG
TGAAGTTATT GAGCAATCCT TTGGGGAGCA GCATTTATGC TTCAGAACAC TTCAGAGGTT CACTGCTGCA ACTCTAGAAC
ATGGAATGCA CCCTCCAATC TCACCTAAAC CAGAATGGAG GGCTTTGATG GATCAGATGG CTGTCATTGC CACTGAGGAA
TACCGGTCCA TTGTGTTCAA AGAGCCCCGG TTTGTTGAGT ATTTCCGCCT GGCTACACCT GAGTTGGAGT ATGGAAGGAT
GAACATAGGA AGTCGACCGG CAAAGAGGAG GCCGAGTGGA GGCATTGAGA CACTGCGTGC TATACCTTGG ATCTTTGCCT
GGACACAGAC AAGGTTCCAT CTTCCAGTGT GGCTAGGTTT TGGGGCAGCA TTCAAACATG TTATTGATAA GGATGTCAGG
AATATTCATG TGCTTCAGGA GATGTACAAT CAATGGCCTT TCTTTAGGGT CACTCTTGAT TTAGTGGAAA TGGTGTTTGC
CAAAGGAAAC CCAGGGATTG CTGCTCTGTA TGACAGGCTC CTTGTTTCAG AGGAATTGTG GGCATTTGGG GAGCAGTTAA
GGACCAAGTA TGAAGAAACC AAGGCACTCC TCCTTCAGGT GGCTGGGCAC AGGGATCTTC TTGAAGGAGA TCCACACTTG
AAGCAAAGAC TTCGGCTACG TGATTCTTAC ATCACCACCC TGAATGTGTG CCAAGCATAC ACATTGAAAC GCATTCGTGA
TCCAAACTAT AACGTGAAGC TGCGTCCTCA CATCTCCAAA GAGTCTATAG AAATAAGTAA ACCTGCTGAT GAACTCATAA
CACTTAACCC AACAAGTGAG TATGCTCCTG GTTTGGAAGA CACTCTCATT CTTACCATGA AGGGTATTGC TGCTGGTCTG
CAAAACACTG GTTAAACCTC AGTTTCTGTC TTCTTTTTTC TTCTTCTTCT GGTTTCTGTT TCTTTATCAG AAATAACGTA
CGAGTTTAGG TGCATGCACC AAAAGGGTGT TCCTCTTACC CCCCTTGTAT CCATGTTTTA CAAGATACTA CAAAGAGATT
AGCTACGTAC TACACAATGA GTCAATGCTT GTATGTATGC AACTTATTCT TATGTTGCAA TACAAAATTA TGTTTTGATT
ACTAGTTGTT ATATGAACTG CTTTGTGTAT CACTTATTTC AAGCAACTCT TTGGTATACT AATATTCTAC TTTTTTTTAC
ATAATGGGGT GCTTAAGATG CCATAGTAGA TGATGTGTGT GTGTTGCCAT GCTTATATTT TATCCATTTG GATAAATTTC
TTTCTAAAAT ATTTTTTAGG AGAAGCAAAT 

>Vigan.06G053100.01
ATGGCGAACA GGAACTTAGA AAAGATGGCA TCCATTGATG CTCAGCTTCG GCTTTTGGTT CCTGCCAAAG TGAGTGAGGA
TGATAAACTG GTTGAGTATG ATGCTTTGCT CTTGGATCGG TTCCTTGATA TTCTTCAGGA TTTACATGGG GAGGATCTGA
AGGAAACGGT TCAAGAGGTG TATGAACTTT CTGCTGAGTA TGAAGGAAAG CATGACCCAA AGAAACTGGA GGAACTTGGA
AATCTGATAA CTAGTTTGGA TGCTGGAGAT TCCATTGTTG TTGCCAAGTC GTTTTCCCAC ATGCTTAACT TGGCCAACTT
AGCTGAAGAG GTTCAAATCG CTCACCGCAG AAGGAACAAG TTGAAGAAAG GTGATTTTGC TGATGAGAAC AGTGCCACAA
CTGAATCAGA CATTGAAGAA ACACTCAAGA AACTTGTGGT GGATATGAAG AAGTCTCCTC AGGAAGTTTT TGATGAGCTG
AAAAACCAGA CTGTTGATCT GGTTCTTACT GCTCATCCTA CTCAATCAGT CCGTAGATCT CTGCTTCAAA AGCACGGAAG
GATAAGAAAT TGTTTAACTC AATTGTATGC CAAAGACATC ACTCCTGATG ATAAGCAGGA GCTTGATGAG GCTCTGCAGA
GGGAGATTCA AGCTGCATTC CGCACTGATG AAATCAGAAG GACCCCTCCT ACCCCACAAG ATGAGATGAG GGCAGGGATG
AGTTACTTCC ATGAAACAAT CTGGAAAGGT GTACCTATGT TTCTTCGTCG TGTTGATACA GCTTTGAAGA ATATAGGGAT
TAATGAACGT GTCCCTTATA ACGCGCCTCT CATTCAATTT TCTTCTTGGA TGGGAGGAGA TCGTGATGGC AATCCAAGAG
TAACTCCTGA AGTGACCAGA GATGTTTGCT TATTGGCTAG AATGATGGCT GCTACCATGT ACTATTCCCA GATAGAGGAT
CTTATGTTTG AACTGTCAAT GTGGCGCTGC AACGATGAGC TACAGGCCCG TGCAGATGAA CTTAACAGGT CTTCCAAGAA
AAATGCAGTT GCAAAACACT ACATAGAATT TTGGAAAGCC ATTCCTCCAA ATGAACCATA TCGTGTTTTA CTGGGTGAAG
TAAGGAATAG GCTTTACCAG ACTCGTGAGC GCTCTCGCCA TTTGCTAGCT CATGGCTACT CTGACATTCC AGAGGAAGAA
ACTTTCACCA ATGTTGAGGA GTTCTTGGAA CCCCTTGAAC TATGTTACAG GTCACTCTGT GCTTGTGGCG ATCGTGCAAT
TGCTGATGGA AGCCTGCTAG ATTTCTTGAG GCAAGTCTCT ACTTTTGGAT TATCCCTTGT GAGGCTTGAC ATAAGGCAAG
AATCTGACCG CCACACCGAT GTCTTAGACG CCATCACCAA ACACTTGGAA ATAGGTTCAT ACCAGGAATG GTCAGAGGAA
AAACGGCAGC AATGGCTTTT ATCTGAATTG AGTGGCAAGC GGCCTCTATT TGGCCCTGAC CTTCCCAAAA CTGAAGAAAT
CAGAGATGTT TTGGACACAT TCCATGTGAT ATCAGAGCTT CCTCCAGACA ATTTTGGAGC ATACATCATC TCAATGGCAA
CCGCACCATC TGATGTGCTT GCTGTTGAGC TTCTGCAGCG TGAGTGTCAT GTCAAACACC CTTTGAGAGT TGTGCCATTG
TTTGAGAAGT TGGACGATCT AGAAGCAGCA CCAGCTGCAT TGGCGCGGTT GTTCTCCATA GACTGGTACA TAAACAGGAT
CAATGGGAAG CAAGAAGTGA TGATAGGGTA TTCTGATTCA GGCAAGGATG CTGGAAGGTT TTCTGCAGCT TGGCAGCTGT
ATAAGGCTCA AGAGGATCTT ATAAAGGTGG CTAAGGAGTA TGGTGTGAAG CTAACTATGT TCCACGGTCG AGGAGGGACT
GTTGGAAGAG GAGGTGGCCC AACTCATCTT GCTATTTTGT CTCAGCCTCC GGATACAATT CATGGATCAC TGCGTGTCAC
TGTGCAAGGT GAAGTTATTG AGCAATCCTT TGGGGAGCAG CATTTATGCT TCAGAACACT TCAGAGGTTC ACTGCTGCAA
CTCTAGAACA TGGAATGCAC CCTCCAATCT CACCTAAACC AGAATGGAGG GCTTTGATGG ATCAGATGGC TGTCATTGCC
ACTGAGGAAT ACCGGTCCAT TGTGTTCAAA GAGCCCCGGT TTGTTGAGTA TTTCCGCCTG GCTACACCTG AGTTGGAGTA
TGGAAGGATG AACATAGGAA GTCGACCGGC AAAGAGGAGG CCGAGTGGAG GCATTGAGAC ACTGCGTGCT ATACCTTGGA
TCTTTGCCTG GACACAGACA AGGTTCCATC TTCCAGTGTG GCTAGGTTTT GGGGCAGCAT TCAAACATGT TATTGATAAG
GATGTCAGGA ATATTCATGT GCTTCAGGAG ATGTACAATC AATGGCCTTT CTTTAGGGTC ACTCTTGATT TAGTGGAAAT
GGTGTTTGCC AAAGGAAACC CAGGGATTGC TGCTCTGTAT GACAGGCTCC TTGTTTCAGA GGAATTGTGG GCATTTGGGG
AGCAGTTAAG GACCAAGTAT GAAGAAACCA AGGCACTCCT CCTTCAGGTG GCTGGGCACA GGGATCTTCT TGAAGGAGAT
CCACACTTGA AGCAAAGACT TCGGCTACGT GATTCTTACA TCACCACCCT GAATGTGTGC CAAGCATACA CATTGAAACG
CATTCGTGAT CCAAACTATA ACGTGAAGCT GCGTCCTCAC ATCTCCAAAG AGTCTATAGA AATAAGTAAA CCTGCTGATG
AACTCATAAC ACTTAACCCA ACAAGTGAGT ATGCTCCTGG TTTGGAAGAC ACTCTCATTC TTACCATGAA GGGTATTGCT
GCTGGTCTGC AAAACACTGG TTAA

>Vigan.06G053100.01
MANRNLEKMA SIDAQLRLLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLKETVQEV YELSAEYEGK HDPKKLEELG
NLITSLDAGD SIVVAKSFSH MLNLANLAEE VQIAHRRRNK LKKGDFADEN SATTESDIEE TLKKLVVDMK KSPQEVFDEL
KNQTVDLVLT AHPTQSVRRS LLQKHGRIRN CLTQLYAKDI TPDDKQELDE ALQREIQAAF RTDEIRRTPP TPQDEMRAGM
SYFHETIWKG VPMFLRRVDT ALKNIGINER VPYNAPLIQF SSWMGGDRDG NPRVTPEVTR DVCLLARMMA ATMYYSQIED
LMFELSMWRC NDELQARADE LNRSSKKNAV AKHYIEFWKA IPPNEPYRVL LGEVRNRLYQ TRERSRHLLA HGYSDIPEEE
TFTNVEEFLE PLELCYRSLC ACGDRAIADG SLLDFLRQVS TFGLSLVRLD IRQESDRHTD VLDAITKHLE IGSYQEWSEE
KRQQWLLSEL SGKRPLFGPD LPKTEEIRDV LDTFHVISEL PPDNFGAYII SMATAPSDVL AVELLQRECH VKHPLRVVPL
FEKLDDLEAA PAALARLFSI DWYINRINGK QEVMIGYSDS GKDAGRFSAA WQLYKAQEDL IKVAKEYGVK LTMFHGRGGT
VGRGGGPTHL AILSQPPDTI HGSLRVTVQG EVIEQSFGEQ HLCFRTLQRF TAATLEHGMH PPISPKPEWR ALMDQMAVIA
TEEYRSIVFK EPRFVEYFRL ATPELEYGRM NIGSRPAKRR PSGGIETLRA IPWIFAWTQT RFHLPVWLGF GAAFKHVIDK
DVRNIHVLQE MYNQWPFFRV TLDLVEMVFA KGNPGIAALY DRLLVSEELW AFGEQLRTKY EETKALLLQV AGHRDLLEGD
PHLKQRLRLR DSYITTLNVC QAYTLKRIRD PNYNVKLRPH ISKESIEISK PADELITLNP TSEYAPGLED TLILTMKGIA
AGLQNTG*