GBrowse Details

Vigan.06G053300.01

Basic Information:
Name: Vigan.06G053300.01
Multiple alignment
Variant Information
Position: Chr06:7388066..7405939 (+ strand)
Length: 17874
Functional Information:
Description: Similar to Uncharacterized protein. [B7FMQ3, Medicago truncatula]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:61.50,34.19,51.72,50.99,75.55,45.81,40.74,38.76
Arabidopsis thaliana homolog: AT1G78870.1
Automatic updates:
Name: NM_001248126 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500231 (LOC100500231), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254710 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugating enzyme E2 35-like (LOC100805631), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:7388066..7388151 (+ strand)
Length: 86
Type: five_prime_UTR
Position: Chr06:7388152..7388187 (+ strand)
Length: 36
Type: CDS
Position: Chr06:7388567..7388594 (+ strand)
Length: 28
Type: CDS
Position: Chr06:7388874..7388960 (+ strand)
Length: 87
Type: CDS
Position: Chr06:7400959..7401017 (+ strand)
Length: 59
Type: CDS
Position: Chr06:7404438..7404479 (+ strand)
Length: 42
Type: CDS
Position: Chr06:7404553..7404626 (+ strand)
Length: 74
Type: CDS
Position: Chr06:7405178..7405275 (+ strand)
Length: 98
Type: CDS
Position: Chr06:7405363..7405400 (+ strand)
Length: 38
Type: CDS
Position: Chr06:7405401..7405939 (+ strand)
Length: 539
Type: three_prime_UTR


>Vigan.06G053300.01
GTTCTTTGTA TATCAATGCC AGTGAGAGAA ACTCTCTCTT CCTCTCTCTA GAAACCCTAT TGCACGCTTT TCAATCCAGC
TCAACAATGG CCAACAGCAA TCTACCTCGA AGAATCATCA AGGAAACGCA GCGTTTGCTC AGTGAGCCAG CACCTGGAAT
TAGTGCGTCC CCATCTGAAG ACAATATGAG ATATTTCAAT GTGATGATCC TGGGACCAAC CCAGTCCCCT TACGAAGGAG
GAGTATTTAA GTTAGAACTA TTTTTGCCAG AAGAATATCC AATGGCTGCT CCGAAGGTTC GGTTTTTAAC AAAAATATAT
CATCCAAACA TTGATAAGCT TGGCAGAATA TGTCTTGATA TTCTGAAAGA CAAGTGGAGT CCTGCTCTTC AGATTCGTAC
TGTTCTATTA AGCATTCAAG CTCTATTGAG TGCACCAAAC CCAGATGATC CACTTTCTGA AAACATTGCC AAGCATTGGA
AATCTAATGA GGCCGAGGCC GTTGAAACAG CGAAGGAATG GACCCGATTA TATGCCAGTG ACGCCTGATG ATAAGGTTCA
AAGTGTGGCT CCATAATAAC AATTGTAACC ATCATTTTAT ACTGGAATTC TAGCGGATCT ATGAATTATC GGAGTTAATA
TCCCTGGCAG CTTCCAGTTA CCTGTTAATT TCTTCTCTTG GGAGCTGCCA TATCTTTTAC TTGTCTAACA ATTTAGAACG
TGCTTCAATC ATCGGCTGTG AAGTAATTTG TTGTTCTGAA CTCAACATCA AAGGCCAAAA TTTGCGAATT AGTTTATGTT
CTCTTTAGCT TAATGAACCA TGCCATAATT TGTTGAGTTA GTAAGTCTAA TGGGCAAATC TGGTTGAATG GGAACGTCTT
GAGCTGAATT TTCCAAAGGG TTGAAAAAAA CATTCTTATA TGATGTATTA TAACAATAAG ATTAGGGTTC CTATACGAGT
GTCATGTTTG GGTTTGATAT TGAATGACAT GTTGCAGCAT GGTTGATGAG ATAATTGTCT CTTAACTATT TCGTCGAAAG
TATGCATAAA AAATGTCAGA TGTCTGATCT TTACATGAAT ACCACAA

>Vigan.06G053300.01
ATGGCCAACA GCAATCTACC TCGAAGAATC ATCAAGGAAA CGCAGCGTTT GCTCAGTGAG CCAGCACCTG GAATTAGTGC
GTCCCCATCT GAAGACAATA TGAGATATTT CAATGTGATG ATCCTGGGAC CAACCCAGTC CCCTTACGAA GGAGGAGTAT
TTAAGTTAGA ACTATTTTTG CCAGAAGAAT ATCCAATGGC TGCTCCGAAG GTTCGGTTTT TAACAAAAAT ATATCATCCA
AACATTGATA AGCTTGGCAG AATATGTCTT GATATTCTGA AAGACAAGTG GAGTCCTGCT CTTCAGATTC GTACTGTTCT
ATTAAGCATT CAAGCTCTAT TGAGTGCACC AAACCCAGAT GATCCACTTT CTGAAAACAT TGCCAAGCAT TGGAAATCTA
ATGAGGCCGA GGCCGTTGAA ACAGCGAAGG AATGGACCCG ATTATATGCC AGTGACGCCT GA

>Vigan.06G053300.01
MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP
NIDKLGRICL DILKDKWSPA LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SDA*