VIGGS:GBrowse

Vigan.06G054600.01

Basic Information:

Name:	Vigan.06G054600.01 Multiple alignment Variant Information
Position:	Chr06:7674593..7679421 (+ strand)
Length:	4829

Functional Information:

Description:	Similar to Malate dehydrogenase. [V7AK23, Phaseolus vulgaris]
GO:	Biological Process: carbohydrate metabolic process (GO:0005975)
	Biological Process: malate metabolic process (GO:0006108)
	Biological Process: cellular carbohydrate metabolic process (GO:0044262)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: malate dehydrogenase activity (GO:0016615)
	Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616)
	Molecular Function: L-malate dehydrogenase activity (GO:0030060)
InterPro:	Lactate/malate dehydrogenase, N-terminal (IPR001236)
	Malate dehydrogenase, active site (IPR001252)
	L-lactate/malate dehydrogenase (IPR001557)
	Malate dehydrogenase, type 1 (IPR010097)
	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (IPR015955)
	NAD(P)-binding domain (IPR016040)
	Lactate/malate dehydrogenase, C-terminal (IPR022383)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:15.61,38.63,232.52,144.12,299.71,297.44,190.51,151.96
Arabidopsis thaliana homolog:	AT1G53240.1, AT3G15020.1

Automatic updates:

Name:	NM_001289254 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max malate dehydrogenase, mitochondrial-like (LOC100777296), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	21667246 NCBI(pubmed)
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001354164 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max malate dehydrogenase (MDH-1), mRNA.
PubMed ID:	11535646 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:7674593..7674740 (+ strand)
Length:	148
Type:	five_prime_UTR

Position:	Chr06:7674741..7674995 (+ strand)
Length:	255
Type:	CDS

Position:	Chr06:7675926..7676099 (+ strand)
Length:	174
Type:	CDS

Position:	Chr06:7677135..7677303 (+ strand)
Length:	169
Type:	CDS

Position:	Chr06:7677585..7677646 (+ strand)
Length:	62
Type:	CDS

Position:	Chr06:7677753..7677874 (+ strand)
Length:	122
Type:	CDS

Position:	Chr06:7678006..7678123 (+ strand)
Length:	118
Type:	CDS

Position:	Chr06:7678808..7678945 (+ strand)
Length:	138
Type:	CDS

Position:	Chr06:7678946..7679421 (+ strand)
Length:	476
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G054600.01
CTAAAAACCT GCAGGTTCAT ATTCACTCAC CCACTAACAC TCTCACCATA AATTGTGACC CTTCTCGCAC AAACTCTTTA
TTCTTTTTTC TCTCTCGAGT TTTTTCCGAA AAGCTGAGTC TCGAAGCTAA CACCAAAGAG AGAGAACAAT GGTGAAGCCA
TCCATGCTCA GATCTCTCCA CTCCGCCGCC ACCCGCGGCG TCTCTCACTT GTCCCGCCGT GGCTACGCCT CTGAGCCGGG
GCCGGAACGC AAGGTCGCTG TTCTCGGTGC CGCCGGTGGG ATCGGGCAGC CCCTTTCCCT TCTAATGAAG CTTAACCCCC
TCGTTTCTAG CCTCTCCCTC TACGATATCG CCGGAACCCC CGGCGTTGCC GCCGATGTCA GCCACATTAA CACCAGATCT
AAGGTTGTAG GGTACCAAGG TGAGGAAGAG CTTGGCAAAG CTTTGGAGGG TGCAGATGTT GTCATAATTC CTGCTGGTGT
GCCCAGAAAG CCTGGAATGA CCCGGGATGA TCTTTTTAAT ATCAATGCTG GCATTGTCAA GGCACTTTGT ACTGCTATTT
CTAAATACTG CCCCCATGCC CTTGTTAACA TGATAAGCAA TCCTGTGAAC TCCACTGTTC CTATTGCGGC TGAAGTTTTC
AAGAAAGCTG GAACATATGA TGAGAAGAGA CTATTTGGTG TAACCACCCT TGATGTCGTC AGGGCAAAAA CTTTCTATGC
TGGGAAAGCC AATGTTCCAG TTGATGGTGT CAATGTGCCT GTTGTGGGTG GCCATGCAGG CATTACTATT CTACCCCTAT
TTTCTCAAGC TACACCAAAA GCCAATCTTG ATGATGATGT CATCAAGGCT CTTACAAAGA GGACTCAAGA TGGAGGAACA
GAAGTTGTGG AAGCTAAGGC TGGAAAGGGT TCTGCAACTC TGTCCATGGC CTATGCTGGT GCCCTTTTCG CTGATGCTTG
TCTCAAGGGC CTTAACGGGG TTCCAGATGT TGTTGAGTGC TCATTTGTGC AATCCACTGT CACTGAACTT CCTTTCTTTG
CTTCAAAGGT GAGGCTTGGG AAGAATGGTG TGGAGGAAGT TCTGGGATTG GGACCTCTCT CTGATTTTGA GAAACAAGGC
CTAGAGAGCC TTAAGGGTGA ACTCAAATCA TCAATTGAGA AGGGAATCAA ATTTGCAAAC CAGTAATTGA ACATCTCAAA
GACATGTCTG GTAGGTAACT GGATATTCCT AAGAACCAAA TCAAAATTTT GCAATCTCAG AACCATTGTT GTATTGTTGC
CCGCAGTGGT GGCGGCCTTG TTGTTTTGTT TAGAGTAGGT ATACGCCATG GTTTAATAAT TTAAGTCTGA GAGCATTTTG
CCAAGGGATT CATCAATCTT AAAACCAGTT TTAGGTGTTG ACCATTCAAT TAATAATTGT CCCTTTTAAT GTGGTTTCAC
ATTATGTAAT TGCAGGGTGT TACACCTCTT TTCTTGTTGA TTGTTTTAGC AGTCTTGTGA AAACGTTTTC AACCCTTTTG
TGAGTGAGTT CAGTAAGATA AAACTTGGAC TTTGTTGAAG TTTGATTACT TTTTGGACAT GTTTTTATTT ATTTCTTCTA
ATATGGTTAA ATTTTTGTAA AAGCTATAAA ATTATATAGG TGGTTTTTAA ATGACAAGTG AG

[show][hide][copy]CDS

>Vigan.06G054600.01
ATGGTGAAGC CATCCATGCT CAGATCTCTC CACTCCGCCG CCACCCGCGG CGTCTCTCAC TTGTCCCGCC GTGGCTACGC
CTCTGAGCCG GGGCCGGAAC GCAAGGTCGC TGTTCTCGGT GCCGCCGGTG GGATCGGGCA GCCCCTTTCC CTTCTAATGA
AGCTTAACCC CCTCGTTTCT AGCCTCTCCC TCTACGATAT CGCCGGAACC CCCGGCGTTG CCGCCGATGT CAGCCACATT
AACACCAGAT CTAAGGTTGT AGGGTACCAA GGTGAGGAAG AGCTTGGCAA AGCTTTGGAG GGTGCAGATG TTGTCATAAT
TCCTGCTGGT GTGCCCAGAA AGCCTGGAAT GACCCGGGAT GATCTTTTTA ATATCAATGC TGGCATTGTC AAGGCACTTT
GTACTGCTAT TTCTAAATAC TGCCCCCATG CCCTTGTTAA CATGATAAGC AATCCTGTGA ACTCCACTGT TCCTATTGCG
GCTGAAGTTT TCAAGAAAGC TGGAACATAT GATGAGAAGA GACTATTTGG TGTAACCACC CTTGATGTCG TCAGGGCAAA
AACTTTCTAT GCTGGGAAAG CCAATGTTCC AGTTGATGGT GTCAATGTGC CTGTTGTGGG TGGCCATGCA GGCATTACTA
TTCTACCCCT ATTTTCTCAA GCTACACCAA AAGCCAATCT TGATGATGAT GTCATCAAGG CTCTTACAAA GAGGACTCAA
GATGGAGGAA CAGAAGTTGT GGAAGCTAAG GCTGGAAAGG GTTCTGCAAC TCTGTCCATG GCCTATGCTG GTGCCCTTTT
CGCTGATGCT TGTCTCAAGG GCCTTAACGG GGTTCCAGAT GTTGTTGAGT GCTCATTTGT GCAATCCACT GTCACTGAAC
TTCCTTTCTT TGCTTCAAAG GTGAGGCTTG GGAAGAATGG TGTGGAGGAA GTTCTGGGAT TGGGACCTCT CTCTGATTTT
GAGAAACAAG GCCTAGAGAG CCTTAAGGGT GAACTCAAAT CATCAATTGA GAAGGGAATC AAATTTGCAA ACCAGTAA

[show][hide][copy]PROTEIN

>Vigan.06G054600.01
MVKPSMLRSL HSAATRGVSH LSRRGYASEP GPERKVAVLG AAGGIGQPLS LLMKLNPLVS SLSLYDIAGT PGVAADVSHI
NTRSKVVGYQ GEEELGKALE GADVVIIPAG VPRKPGMTRD DLFNINAGIV KALCTAISKY CPHALVNMIS NPVNSTVPIA
AEVFKKAGTY DEKRLFGVTT LDVVRAKTFY AGKANVPVDG VNVPVVGGHA GITILPLFSQ ATPKANLDDD VIKALTKRTQ
DGGTEVVEAK AGKGSATLSM AYAGALFADA CLKGLNGVPD VVECSFVQST VTELPFFASK VRLGKNGVEE VLGLGPLSDF
EKQGLESLKG ELKSSIEKGI KFANQ*