VIGGS:GBrowse

Vigan.06G056800.01

Basic Information:

Name:	Vigan.06G056800.01 Multiple alignment Variant Information
Position:	Chr06:8165644..8168737 (- strand)
Length:	3094

Functional Information:

Description:	Similar to 30S ribosomal protein S20 isoform 1. [XP_007021563.1, Theobroma cacao]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S20 (IPR002583)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:147.27,31.12,46.50,187.74,31.09,73.99,12.14,45.52
Arabidopsis thaliana homolog:	AT3G15190.1

Structure :

[show][hide]Parts:

Position:	Chr06:8165644..8165995 (- strand)
Length:	352
Type:	three_prime_UTR

Position:	Chr06:8165996..8166226 (- strand)
Length:	231
Type:	CDS

Position:	Chr06:8168159..8168322 (- strand)
Length:	164
Type:	CDS

Position:	Chr06:8168453..8168594 (- strand)
Length:	142
Type:	CDS

Position:	Chr06:8168595..8168737 (- strand)
Length:	143
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G056800.01
AAAATATTTA CAAAAATTTG TAATAAAGAA AACAGTAAGG GTAGTATGTA AATATCGCAT AGAACGTTCA ACAAAGACCA
ATCATCGTCA TCTTTTCTCA TCGGATAAGA GAGAGAATTG CCTCTTTACT CACACAGGGA GATATGGCAA CCGCTGTTTC
GTGCTCATGG GTTACCCTTT CCTCCCAAAT GAAGAACATT TCTCTCACTT CCTATTCCCA TCCCATTTCC AATTCCAGTT
CTCTCAGTTT CTCCAAAAGC CTCTCTCTCC CTCTCTTCTC ACAAGGTAAC TGCTTGCCGC TGAGCACAGT GCAAAGACGC
GCGTCTGTGG TTTGCGAGGC TGCCCCGAAG AAAAAGGTGG ACTCCGCTGT GAAGAGAGCT CGCCAAGCCG AGAACCGCCG
CATTTACAAC AAAGCTCGTA AATCTGAGAT AAAAACCCGT ACCAAGAAGG TTTTGGAAGC TCTGGAAGTT CTGAAGAAGA
AACAAGATGC AGTATCCGGA GAAATCCTCC CTATTGAGAA GTTGATTGGA GAGGCATACT CAACAATTGA TAAAGCTGTG
AGAGCAGGAA CACTGCACAG GAACACTGGA GCAAATCGAA AGGCTCGACT TGCGCGAAGG AAGAAGGCGG TGGAGATCCA
CCATGGCTGG TATATCCCAG TTCCCGAAGC CACTGCATGA ACCAATCCTA TTGCTTGTTT ACTTCGGGTA AAATGAGGTG
CCAGTGAAGA CTTTCTGCAG ATTTTTTCAT CTCTGTTCAA ACATTGTATT TAGTCTTCCT TGGTGTTGTT CAAATTGGTT
TACAATTCCA TACTTCATGT GTACCATCAT TATATAGAGC CATTGATTTG AACAACATCC TCGTAATTTG CCTTTGTTGT
ACTTTTTTCC ATGTTTTATA ATGCAATGCC TCCATAAACT TAATTGTATT TCCCCTCACA GGTGAAAATT GATTGTTGTT
ATAATCCTGC ACATGATGCT GCAGGTGCAT CACTTAATCT TTGCTCCTGT ACAGTATCAT CGTGAATTAT TT

[show][hide][copy]CDS

>Vigan.06G056800.01
ATGGCAACCG CTGTTTCGTG CTCATGGGTT ACCCTTTCCT CCCAAATGAA GAACATTTCT CTCACTTCCT ATTCCCATCC
CATTTCCAAT TCCAGTTCTC TCAGTTTCTC CAAAAGCCTC TCTCTCCCTC TCTTCTCACA AGGTAACTGC TTGCCGCTGA
GCACAGTGCA AAGACGCGCG TCTGTGGTTT GCGAGGCTGC CCCGAAGAAA AAGGTGGACT CCGCTGTGAA GAGAGCTCGC
CAAGCCGAGA ACCGCCGCAT TTACAACAAA GCTCGTAAAT CTGAGATAAA AACCCGTACC AAGAAGGTTT TGGAAGCTCT
GGAAGTTCTG AAGAAGAAAC AAGATGCAGT ATCCGGAGAA ATCCTCCCTA TTGAGAAGTT GATTGGAGAG GCATACTCAA
CAATTGATAA AGCTGTGAGA GCAGGAACAC TGCACAGGAA CACTGGAGCA AATCGAAAGG CTCGACTTGC GCGAAGGAAG
AAGGCGGTGG AGATCCACCA TGGCTGGTAT ATCCCAGTTC CCGAAGCCAC TGCATGA

[show][hide][copy]PROTEIN

>Vigan.06G056800.01
MATAVSCSWV TLSSQMKNIS LTSYSHPISN SSSLSFSKSL SLPLFSQGNC LPLSTVQRRA SVVCEAAPKK KVDSAVKRAR
QAENRRIYNK ARKSEIKTRT KKVLEALEVL KKKQDAVSGE ILPIEKLIGE AYSTIDKAVR AGTLHRNTGA NRKARLARRK
KAVEIHHGWY IPVPEATA*