GBrowse Details

Vigan.06G061600.01

Basic Information:
Name: Vigan.06G061600.01
Multiple alignment
Variant Information
Position: Chr06:9450651..9455951 (+ strand)
Length: 5301
Functional Information:
Description: Similar to Uncharacterized protein. [I1MIH4, Glycine max]
GO: Biological Process: protein phosphorylation (GO:0006468)
Molecular Function: protein kinase activity (GO:0004672)
Molecular Function: protein serine/threonine kinase activity (GO:0004674)
Molecular Function: calcium ion binding (GO:0005509)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro: Protein kinase domain (IPR000719)
Recoverin like (IPR001125)
EF-hand domain (IPR002048)
Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
Serine/threonine-protein kinase, active site (IPR008271)
Protein kinase-like domain (IPR011009)
EF-hand domain pair (IPR011992)
Protein kinase, ATP binding site (IPR017441)
EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.11,5.27,0.56,0.64,22.44,1.00,31.45,0.74
Automatic updates:
Name: KY399795 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Ca2+/calmodulin-dependent protein kinase (Glyma.08G227200.1) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001376225 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 (CCAMK), mRNA.
PubMed ID: 23869591 NCBI(pubmed)
22889004 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:9450651..9450999 (+ strand)
Length: 349
Type: five_prime_UTR
Position: Chr06:9451000..9451427 (+ strand)
Length: 428
Type: CDS
Position: Chr06:9451562..9451867 (+ strand)
Length: 306
Type: CDS
Position: Chr06:9452265..9452319 (+ strand)
Length: 55
Type: CDS
Position: Chr06:9452621..9452731 (+ strand)
Length: 111
Type: CDS
Position: Chr06:9453186..9453418 (+ strand)
Length: 233
Type: CDS
Position: Chr06:9453974..9454181 (+ strand)
Length: 208
Type: CDS
Position: Chr06:9454887..9454946 (+ strand)
Length: 60
Type: CDS
Position: Chr06:9455569..9455748 (+ strand)
Length: 180
Type: CDS
Position: Chr06:9455749..9455951 (+ strand)
Length: 203
Type: three_prime_UTR


>Vigan.06G061600.01
TACTCTTGAC CTTGACACAG TTTTAATCTC AATGTGGCTA AATGGTGAAG ATGGAAACAT TAAACACAGA ACATAGTGCT
AGCAGTTGAC TCTGTCTTTG TCCCTTCCCA AATACCTTCC ACCAGCCACA TTGTTTTTTC TCTTGTACCT ATCCCAATTT
GCATCATATT TTATGCCATA AACTAATGCA CAAACTCTTA CAGGTTATGA TGTCACTCTC AACCGTTTCA ACACGCGTTT
TGAAGGCTCC TCCTATCATT GAGTTAACAA TTTTTTCTTA TTGTCCCTGC AAATTTTCTG AGTCTTCAAG ATTCCTTAGT
TTCAAACACT TTGTGTGCAC CACAACAGCA TGGGGTATGA AACCAGAACA CTCTCAGATG AGTATGAAGT CTCAGATGTT
CTAGGAAGAG GTGGATTTTC TGTTGTTAGA AAAGGCACAA GAAAATCAAG CAGTGACACC AAAAGCCTTG TGGCCATCAA
AACTTTGAGA AGATCAGGCA CTGCCTCAAA CTCCAACCAC CCTTCTGGGT TTCCAAGACC AAAGGGTGCA GAGAAGAGCT
CAGCTGCTAT GATGGGGCTC CCGTGGAGAC AAGTCTCAGT CTCAGATGCC TTGCTCACCA ATGAGATTCT TGTGATGAGG
AGAATAGTGG AAAACGTTTC ACCTCACCCT AATGTGATTG ACCTCTATGA TGTGTATGAG GACTCAAATG GAGTGCACCT
TGTGTTGGAG CTGTGTTCTG GTGGAGAACT GTTTGATAGG ATTGTAGCAC AAGATAGGTA CTCAGAGACT GAAGCTGCAG
GTGTGGTTCG CCAGATAGCT TCAGGATTAG AGGCTATTCA TAGAGCTAAC ATTGTGCACA GGGACTTGAA GCCTGAGAAT
TGTCTTTTCT TGGATGTGAG GAGGGATTCT CCTCTTAAGA TCATGGATTT TGGTTTGAGT TCTGTTGAAG AATTCACTGA
CCCAGTTGTT GGTTTGTTTG GATCCATTGA TTATGTTTCA CCAGAGGCTC TTTCTCAAGG GAAGATAACT ACCAAGAGTG
ACATGTGGTC TCTTGGGGTG ATTCTATACA TCTTACTCTC TGGGTATCCA CCTTTCATTG CTCAGTCTAA TCGCCAGAAA
CAACAAATGA TAATGAATGG GAACTTCAGT TTCTATGAGA AGACATGGAA GGGCATTACT CAATCAGCAA AGCAACTAAT
TTCAGATCTT CTGACAGTTG ATCCTAGTAG GAGACCTAGT GCTCAAGATC TTCTGAGTCA TCCATGGGTG GTAGGTGACA
AGGCCAAGGA TGATGCAATG GACCCTGAGA TTGTCTCAAG ATTGCAGAGC TTCAACGCAA GACGCAAACT GCGAGCAGCT
GCAATTGCTA GTGTTTGGAG CTCCACAATC TTCCTCAGAA CCAAAAAGCT GAAATCTTTG GTAGGAACAC ATGATCTCAC
AGAAGAGGAA ATTGAAAACC TCAGGATAAA TTTTAAGAAA ATATGTGTGA GTGGAGACAA TGCCACTCTA AGTGAGTTTG
AAGAGGTGCT GAAAGCAATG AATAGGCCAT CACTGGTCCC TCTAGCACCA CGAATATTTG ACTTGTTTGA CAACAACCGT
GATGGAACAG TTGACATGAG AGAGATTCTA TGTGGCTTTT CCAGCTTCAA AAACTCCAAA GGAGATGATG CTCTTCTTTT
GTGCTTCCAG ATGTATGACA CAGATCGATC AGGCTGCATC ACCAAGGAAG AAGTCGCATC CATGCTCAGA GCTTTACCAG
AAGAGTGTTT GCCAGCTGAT ATCACTGAAC CTGGGAAATT GGATGAGATA TTTGACAGAA TGGATGCCAA CAGTGATGGA
AAAGTTACCT TTGATGAATT CAAAGCTGCC ATGCAGAGAG ATAGCTCTCT TCAAGACCTT GTTCTCTCTT CTCTAAGACC
ACAATCATAG TTCTTCAAAT TTCCATTAAT CTATATGCTA CTCTTATCAA CCATGCACTG CTATTTTTGT CCTTTTTTTC
CCCTTGATAC AGTAGGACAA AAACACTACT CCAGGACTAT ATACAGTGAT GTTGTATCAT ATAATTTTTG CTTAGACAGT
TAATTAACTA TGAACAATTA TGCTTCTTAT GTTACATCAC TCTCAAAGTT AAG

>Vigan.06G061600.01
ATGGGGTATG AAACCAGAAC ACTCTCAGAT GAGTATGAAG TCTCAGATGT TCTAGGAAGA GGTGGATTTT CTGTTGTTAG
AAAAGGCACA AGAAAATCAA GCAGTGACAC CAAAAGCCTT GTGGCCATCA AAACTTTGAG AAGATCAGGC ACTGCCTCAA
ACTCCAACCA CCCTTCTGGG TTTCCAAGAC CAAAGGGTGC AGAGAAGAGC TCAGCTGCTA TGATGGGGCT CCCGTGGAGA
CAAGTCTCAG TCTCAGATGC CTTGCTCACC AATGAGATTC TTGTGATGAG GAGAATAGTG GAAAACGTTT CACCTCACCC
TAATGTGATT GACCTCTATG ATGTGTATGA GGACTCAAAT GGAGTGCACC TTGTGTTGGA GCTGTGTTCT GGTGGAGAAC
TGTTTGATAG GATTGTAGCA CAAGATAGGT ACTCAGAGAC TGAAGCTGCA GGTGTGGTTC GCCAGATAGC TTCAGGATTA
GAGGCTATTC ATAGAGCTAA CATTGTGCAC AGGGACTTGA AGCCTGAGAA TTGTCTTTTC TTGGATGTGA GGAGGGATTC
TCCTCTTAAG ATCATGGATT TTGGTTTGAG TTCTGTTGAA GAATTCACTG ACCCAGTTGT TGGTTTGTTT GGATCCATTG
ATTATGTTTC ACCAGAGGCT CTTTCTCAAG GGAAGATAAC TACCAAGAGT GACATGTGGT CTCTTGGGGT GATTCTATAC
ATCTTACTCT CTGGGTATCC ACCTTTCATT GCTCAGTCTA ATCGCCAGAA ACAACAAATG ATAATGAATG GGAACTTCAG
TTTCTATGAG AAGACATGGA AGGGCATTAC TCAATCAGCA AAGCAACTAA TTTCAGATCT TCTGACAGTT GATCCTAGTA
GGAGACCTAG TGCTCAAGAT CTTCTGAGTC ATCCATGGGT GGTAGGTGAC AAGGCCAAGG ATGATGCAAT GGACCCTGAG
ATTGTCTCAA GATTGCAGAG CTTCAACGCA AGACGCAAAC TGCGAGCAGC TGCAATTGCT AGTGTTTGGA GCTCCACAAT
CTTCCTCAGA ACCAAAAAGC TGAAATCTTT GGTAGGAACA CATGATCTCA CAGAAGAGGA AATTGAAAAC CTCAGGATAA
ATTTTAAGAA AATATGTGTG AGTGGAGACA ATGCCACTCT AAGTGAGTTT GAAGAGGTGC TGAAAGCAAT GAATAGGCCA
TCACTGGTCC CTCTAGCACC ACGAATATTT GACTTGTTTG ACAACAACCG TGATGGAACA GTTGACATGA GAGAGATTCT
ATGTGGCTTT TCCAGCTTCA AAAACTCCAA AGGAGATGAT GCTCTTCTTT TGTGCTTCCA GATGTATGAC ACAGATCGAT
CAGGCTGCAT CACCAAGGAA GAAGTCGCAT CCATGCTCAG AGCTTTACCA GAAGAGTGTT TGCCAGCTGA TATCACTGAA
CCTGGGAAAT TGGATGAGAT ATTTGACAGA ATGGATGCCA ACAGTGATGG AAAAGTTACC TTTGATGAAT TCAAAGCTGC
CATGCAGAGA GATAGCTCTC TTCAAGACCT TGTTCTCTCT TCTCTAAGAC CACAATCATA G

>Vigan.06G061600.01
MGYETRTLSD EYEVSDVLGR GGFSVVRKGT RKSSSDTKSL VAIKTLRRSG TASNSNHPSG FPRPKGAEKS SAAMMGLPWR
QVSVSDALLT NEILVMRRIV ENVSPHPNVI DLYDVYEDSN GVHLVLELCS GGELFDRIVA QDRYSETEAA GVVRQIASGL
EAIHRANIVH RDLKPENCLF LDVRRDSPLK IMDFGLSSVE EFTDPVVGLF GSIDYVSPEA LSQGKITTKS DMWSLGVILY
ILLSGYPPFI AQSNRQKQQM IMNGNFSFYE KTWKGITQSA KQLISDLLTV DPSRRPSAQD LLSHPWVVGD KAKDDAMDPE
IVSRLQSFNA RRKLRAAAIA SVWSSTIFLR TKKLKSLVGT HDLTEEEIEN LRINFKKICV SGDNATLSEF EEVLKAMNRP
SLVPLAPRIF DLFDNNRDGT VDMREILCGF SSFKNSKGDD ALLLCFQMYD TDRSGCITKE EVASMLRALP EECLPADITE
PGKLDEIFDR MDANSDGKVT FDEFKAAMQR DSSLQDLVLS SLRPQS*