GBrowse Details

Vigan.06G065500.01

Basic Information:
Name: Vigan.06G065500.01
Multiple alignment
Variant Information
Position: Chr06:10356554..10371998 (- strand)
Length: 15445
Functional Information:
Description: Similar to Uncharacterized protein. [I1MI92, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Short-chain dehydrogenase/reductase, conserved site (IPR020904)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.58,6.59,10.51,13.54,3.76,3.62,2.64,5.44
Arabidopsis thaliana homolog: AT5G04900.1
Automatic updates:
Name: NM_001358945 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NYC1-like protein (LOC100797874), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:10356554..10356782 (- strand)
Length: 229
Type: three_prime_UTR
Position: Chr06:10356783..10356830 (- strand)
Length: 48
Type: CDS
Position: Chr06:10356975..10357085 (- strand)
Length: 111
Type: CDS
Position: Chr06:10357818..10357859 (- strand)
Length: 42
Type: CDS
Position: Chr06:10357931..10357981 (- strand)
Length: 51
Type: CDS
Position: Chr06:10367019..10367069 (- strand)
Length: 51
Type: CDS
Position: Chr06:10368113..10368170 (- strand)
Length: 58
Type: CDS
Position: Chr06:10368610..10368695 (- strand)
Length: 86
Type: CDS
Position: Chr06:10368782..10368830 (- strand)
Length: 49
Type: CDS
Position: Chr06:10368904..10368971 (- strand)
Length: 68
Type: CDS
Position: Chr06:10369744..10369830 (- strand)
Length: 87
Type: CDS
Position: Chr06:10369926..10369987 (- strand)
Length: 62
Type: CDS
Position: Chr06:10370710..10370778 (- strand)
Length: 69
Type: CDS
Position: Chr06:10371606..10371867 (- strand)
Length: 262
Type: CDS
Position: Chr06:10371868..10371998 (- strand)
Length: 131
Type: five_prime_UTR


>Vigan.06G065500.01
TAAATTGCCA CGAAGTGATC AAATGAAAAT GGCACAAGAA GACGCGTGTT GGTGTGCCAC GTGAACTATC TATCTATTGC
GCTTAAGATC TCTTTTCCCT TTCTTTCTCA TTCCCATCTC GCATCAAATC AATGGCTGCA ACCACCACTC TCTCCTTCCA
CTTTCCATAT CGAAAGCTCT CTTCGCGCTC TCAATTTTCC CTCTCTTCAC CTTCTTCCCG CTTGAAATCC TACACTGTTG
CTTCCCGCTA CAATCTCTGC ATCTCCACCA CCGCCACCCT CTCTCTGTTG GCTTTCCGAA GCCCAAACTC TCCGACGTTT
CTCGCAAAGG CTACTCGGAA CACTCAGCCC ATGCTCCCTC CTTTCAACGT TTTGATTACT GGCTCAACCA AAGGAATAGG
GTATGCATTG GCGAAAGAGT TTTTAAAAGC TGGTGACAAC GTCCTGATTT GCTCAAGATC AGATGAAAGG GTAGAGGCTG
CTGTCCAGAG CCTGAGAGTA GAATTTGGGG AGCAGTATGT GTGGGGAACT AAATGTGATG TGAGAAATGC AGAGGATGTG
AAGAATTTAG TTTCATTTGC TCAAGAAAAA CTGAAATATA TTGATATATG GATCAACAAT GCTGGATCAA ATGCATATAG
CTATAAGCCA CTTGTTGAGG CTTCAGATGA AGATCTTATT GAGGTGGTGA CAACAAATAC ACTTGGCTTG ATGATATGTT
GTCGAGAGGC AATCAAGATG ATGGTGGACC AACCTCGAGG AGGTCATATT TTCAATATTG ATGGAGCAGG TTCGGATGGG
AGGCCAACTC CTAGGTTTGC TGCATATGGA GCAACAAAGA GAAGTGTGGT GCACTTAACG AAGTCCTTAC AGGCAGAATT
GAAGATGCAA GATGTTAAAA ATGTCCTAGT GCATAATCTT TCGCCAGGAA TGGTTACAAC GGATCTTCTC ATGTCCGGTG
TTAATACAAA GCAGGCAAAG TTTTTCATTA ATGTCTTGGC AGAACCGGCT GAAGTGGTTG CAGAATACTT AGTTCCAAAC
ATTAGATCCA TCCCTGCAAA CGGATCAAAG AAACCAACAT ACATTCGATT CCTCACCGGT TTGAAAGCCT ATTCCCAGAT
ATTTTCAAGA TTGGCATTCG GAGCAAGAAG GAACCGATAC ATTCTTGAAG ATTGAACTTC ATGAAAGTTT GTGCAATTTG
CTACTTTCAT TTCTATTTTA GATGTCAATT AACCCCCCCT CCCTCCATTT TTTTTTTTAA ATTTTAAGCC GTTCTTTTCT
ATTATTATTC TTACTAACTA AAATTTACAT GTTTTAAGGG TACATATAGG TGATAAACTA CCTTTTGGCA ATGAGAGAGA
AGTATTAAAT GAATCGTCAA AGCATATATT ATTTTAACAC GGAA

>Vigan.06G065500.01
ATGGCTGCAA CCACCACTCT CTCCTTCCAC TTTCCATATC GAAAGCTCTC TTCGCGCTCT CAATTTTCCC TCTCTTCACC
TTCTTCCCGC TTGAAATCCT ACACTGTTGC TTCCCGCTAC AATCTCTGCA TCTCCACCAC CGCCACCCTC TCTCTGTTGG
CTTTCCGAAG CCCAAACTCT CCGACGTTTC TCGCAAAGGC TACTCGGAAC ACTCAGCCCA TGCTCCCTCC TTTCAACGTT
TTGATTACTG GCTCAACCAA AGGAATAGGG TATGCATTGG CGAAAGAGTT TTTAAAAGCT GGTGACAACG TCCTGATTTG
CTCAAGATCA GATGAAAGGG TAGAGGCTGC TGTCCAGAGC CTGAGAGTAG AATTTGGGGA GCAGTATGTG TGGGGAACTA
AATGTGATGT GAGAAATGCA GAGGATGTGA AGAATTTAGT TTCATTTGCT CAAGAAAAAC TGAAATATAT TGATATATGG
ATCAACAATG CTGGATCAAA TGCATATAGC TATAAGCCAC TTGTTGAGGC TTCAGATGAA GATCTTATTG AGGTGGTGAC
AACAAATACA CTTGGCTTGA TGATATGTTG TCGAGAGGCA ATCAAGATGA TGGTGGACCA ACCTCGAGGA GGTCATATTT
TCAATATTGA TGGAGCAGGT TCGGATGGGA GGCCAACTCC TAGGTTTGCT GCATATGGAG CAACAAAGAG AAGTGTGGTG
CACTTAACGA AGTCCTTACA GGCAGAATTG AAGATGCAAG ATGTTAAAAA TGTCCTAGTG CATAATCTTT CGCCAGGAAT
GGTTACAACG GATCTTCTCA TGTCCGGTGT TAATACAAAG CAGGCAAAGT TTTTCATTAA TGTCTTGGCA GAACCGGCTG
AAGTGGTTGC AGAATACTTA GTTCCAAACA TTAGATCCAT CCCTGCAAAC GGATCAAAGA AACCAACATA CATTCGATTC
CTCACCGGTT TGAAAGCCTA TTCCCAGATA TTTTCAAGAT TGGCATTCGG AGCAAGAAGG AACCGATACA TTCTTGAAGA
TTGA

>Vigan.06G065500.01
MAATTTLSFH FPYRKLSSRS QFSLSSPSSR LKSYTVASRY NLCISTTATL SLLAFRSPNS PTFLAKATRN TQPMLPPFNV
LITGSTKGIG YALAKEFLKA GDNVLICSRS DERVEAAVQS LRVEFGEQYV WGTKCDVRNA EDVKNLVSFA QEKLKYIDIW
INNAGSNAYS YKPLVEASDE DLIEVVTTNT LGLMICCREA IKMMVDQPRG GHIFNIDGAG SDGRPTPRFA AYGATKRSVV
HLTKSLQAEL KMQDVKNVLV HNLSPGMVTT DLLMSGVNTK QAKFFINVLA EPAEVVAEYL VPNIRSIPAN GSKKPTYIRF
LTGLKAYSQI FSRLAFGARR NRYILED*