VIGGS:GBrowse

Vigan.06G072600.01

Basic Information:

Name:	Vigan.06G072600.01 Multiple alignment Variant Information
Position:	Chr06:11568538..11570098 (- strand)
Length:	1561

Functional Information:

Description:	Similar to Ripening related protein. [Q9SWS4, Glycine max]
GO:	Biological Process: defense response (GO:0006952)
GO:	Biological Process: response to biotic stimulus (GO:0009607)
InterPro:	Bet v I domain (IPR000916)
	START-like domain (IPR023393)
	Major latex protein domain (IPR024948)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:447.95,7.84,176.59,22.60,0.48,4.19,145.11,86.82

Automatic updates:

Name:	NM_001249499 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527208 (LOC100527208), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249930 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499848 (LOC100499848), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:11568538..11568805 (- strand)
Length:	268
Type:	three_prime_UTR

Position:	Chr06:11568806..11569077 (- strand)
Length:	272
Type:	CDS

Position:	Chr06:11569775..11570054 (- strand)
Length:	280
Type:	CDS

Position:	Chr06:11570055..11570098 (- strand)
Length:	44
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G072600.01
AAATGGATCC CATGGTTTAA TTAGTTGTGA AGAGTAGGTG AATTATGTTC TATATAAGAG GGACATGGTG GGAATACTCT
TCATCATCAC CATCTTTGTC TCTTCATTTT TTTCCTTCTA GTGCTTCTTT GATCATCATG ACACTTGCTG GTAAAATCAC
CACTGAAATT GGTGTTCATG CAACTGCTGC AAAGTGGTTT AACCTCTTTG CAAAGCAACT CCATCATGTT CAAAACCTTA
CTGATAGAGT CCATGGAACC AAGCTGCATC GTGGTCAAGA CTGGCACCAC ACTGAGTCCA TCAAACACTG GACTTATACC
ATAGATGGTA AGGTTACAAC ATGTCAGGAG AGTATTGAAT CTATTGATGA AGCAAACAAA ACAATCACCT ACAAACTTTT
CAATGGAGAC ATCGATAAGC AGTTCAAGCT CTTCAAGTTC ATATTTCAAG CAATCGATAA GAACAGTGGC GGCGCTATTA
TCAAATGGAC CATTGAGTAT GAGAGGGTCA GTGAGGAAGT TGATCCTCCT TATGGCTATG TCGAGTACCT GCACAAATGC
ACGGGAGACA TTGATGCTCA TCTTCTCAAG GCATAGTTCC AAAATGTTAT GCACAAAATT AAAAAAATTA AAAAAAATAA
TAAGAATAGC CTTAGCCTTA GGTTAAGTGC TTATCTGTAA AATAATATAT ATCTGTGTGG AGTTTGACAA AGGATGGTTA
TGTTATGTAG AACCTTCCTT TGTGTGGAAT AAACTTGGAT ATGCATGTGG GTCATGTCTT GAAGCTTGTT GAATTATTGT
ATGTTCTAGA GTTCAATGTG ATGAATATGA ATGTTTATGA TTTGTGTAAA AAAATATATT TTCT

[show][hide][copy]CDS

>Vigan.06G072600.01
ATGTTCTATA TAAGAGGGAC ATGGTGGGAA TACTCTTCAT CATCACCATC TTTGTCTCTT CATTTTTTTC CTTCTAGTGC
TTCTTTGATC ATCATGACAC TTGCTGGTAA AATCACCACT GAAATTGGTG TTCATGCAAC TGCTGCAAAG TGGTTTAACC
TCTTTGCAAA GCAACTCCAT CATGTTCAAA ACCTTACTGA TAGAGTCCAT GGAACCAAGC TGCATCGTGG TCAAGACTGG
CACCACACTG AGTCCATCAA ACACTGGACT TATACCATAG ATGGTAAGGT TACAACATGT CAGGAGAGTA TTGAATCTAT
TGATGAAGCA AACAAAACAA TCACCTACAA ACTTTTCAAT GGAGACATCG ATAAGCAGTT CAAGCTCTTC AAGTTCATAT
TTCAAGCAAT CGATAAGAAC AGTGGCGGCG CTATTATCAA ATGGACCATT GAGTATGAGA GGGTCAGTGA GGAAGTTGAT
CCTCCTTATG GCTATGTCGA GTACCTGCAC AAATGCACGG GAGACATTGA TGCTCATCTT CTCAAGGCAT AG

[show][hide][copy]PROTEIN

>Vigan.06G072600.01
MFYIRGTWWE YSSSSPSLSL HFFPSSASLI IMTLAGKITT EIGVHATAAK WFNLFAKQLH HVQNLTDRVH GTKLHRGQDW
HHTESIKHWT YTIDGKVTTC QESIESIDEA NKTITYKLFN GDIDKQFKLF KFIFQAIDKN SGGAIIKWTI EYERVSEEVD
PPYGYVEYLH KCTGDIDAHL LKA*