GBrowse Details

Vigan.06G076100.01

Basic Information:
Name: Vigan.06G076100.01
Multiple alignment
Variant Information
Position: Chr06:12346757..12349648 (+ strand)
Length: 2892
Functional Information:
Description: Similar to metacaspase-4-like. [XP_004510001.1, Cicer arietinum]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: cysteine-type endopeptidase activity (GO:0004197)
InterPro: Peptidase C14, caspase domain (IPR011600)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.83,1.20,2.61,2.15,7.75,6.38,22.81,2.56
Arabidopsis thaliana homolog: AT1G79330.1, AT1G79340.1
Automatic updates:
Name: NM_001250818 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative metacaspase (LOC100527809), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:12346757..12346965 (+ strand)
Length: 209
Type: five_prime_UTR
Position: Chr06:12346966..12347311 (+ strand)
Length: 346
Type: CDS
Position: Chr06:12348213..12349120 (+ strand)
Length: 908
Type: CDS
Position: Chr06:12349121..12349648 (+ strand)
Length: 528
Type: three_prime_UTR


>Vigan.06G076100.01
ATAAAAACAC TTATAGAAAA TTTAAAAGAT GGCTTACAAA GAGAAAAGAA AGAAATTTGT GAAAAGTTGT TTTTGTAAGA
AAAAGAAAGA AAAAAACCAA CACTCTTGTT TGTTTCGTCA ATTCTGAGGT AAAAGAAAGT AAGAGAAAGA GACAGAGAGA
TTCACACACC TGCTTTCAAT TTCGGCTGAA AGAGTGAGAG AAAGTTGCAA TGGCGAAAAA GGCAGTGTTG ATCGGAATCA
ACTACCCGGG CACCAAGGCG GAGCTGAAAG GTTGCATAAA CGACGTGTGG CGGATGCACC AGTGCCTCGT CGAGCGTTAC
GGCTTCTCCG AAGACAACAT CACCGTGTTG ATCGACACGG AGAAATCGTA CACGGAGCCG ACGGGGAAGA ACATCCGGTC
GGCGTTGACC TCGCTGGTCC GATCGGCGGA GCCCGGAGAC GTGTTCTTCG TGCACTACAG CGGACACGGA ACGCGTCTTC
CTGCGGAAAC GGGAGAGGAT GATGACACTG GATTTGATGA ATGCATTGTT CCTGCTGATA TGAACCTCAT CACTGATGAT
GATTTCAGGG AATTTGTTGA GGGGGTCCCT AGTGATTGTA AGCTCACAAT AGTATCAGAT TCTTGCCATA GTGGTGGCCT
AATTGACGGA GCTAAGGAGC AGATAGGAAA TAGTACGAAG AGAGATGAGC AACATTCTGG TTCTGGCTTT GGTTTGTCCA
GTTTTCTACG TCGTACTGCG GAGGATGCCA TTGAGTCTCG TGGAATTCAT ATTCCTTCAG CATTGCGCCA TCATAGACAC
AAGCATGATG ATGAAACTGA TGATAGGGAC ATTGAACTTC CACATGAGCA GTATGGCCAT GTAAAAAATA GGTCATTGCC
ACTTTCTACT GTCATAGAGA TACTGAAGCA GAAAACTGGA AAAAGTGATA TCGATGTTGG GAAATTGAGA CTTTCACTTT
ACGATATTTT TGGGGAAGAT GCTAGCCCTA AAGTAAAGAA GTTCATGAAG GTTATATTGA ACAAACTCCA ACACGGGGAT
GGTGGAAGTG ACAAACACGG TGGAATCTTG GGGTTGGTGG GTAGTCTTGC CCAAGAGTTT ATCAAGCAAA AGCTGGATGC
TAATGATAAT GGATATGCAA AACCTGCCAT GGAAACACAG GTAGACAGTA AGTATGAAGC GTATGCTGGA TCAACAAAGC
CTCGTCTTCC AGACGGTGGA ATTCTGTTGA GCGGTTGTCA GACTGATCAG ACCTCTGCAG ATGCAAGTCC AGCCGGTAAT
GCTGCCAATG CTTACGGAGC TTTCAGCAAT GCAATACAGG CTATAATTGA GGAGACACGT GGTGCAGTCA CAAATCAAGA
ACTTGTTTTG AAGGCAAGAG AGAAGCTTAA GAGAGGAGGT TTCACCCAAA GACCAGGACT CTACTGCAGT GATCACCATG
TTGATGGTTC TTTCGTGTGT TGATAAGTTT TCATCTAGTG CAGAAAAAGG GAATAATTTA TGATTGGTAT GGCATGCTTG
TGTATTACTA TGTTTGGGAC AATCAATGTT GCTCAAAAGG AATATTTACT TCAACTATGA TTTCAGTAAT CTTTCGTTAT
ATCTGATACA AACTAGTTCA GATTGACTGG ACTATATGTG ATACAACCTA GCTATCTACT GTTTCGCTTT TTCAGTGAAT
CATCTTTACA AATATACAAA ATCGAATTAC ATCCCTAAAT GGGTGACAAA ATAATACTAA AATTGAGACT GCACAATTGT
GTTGCGGGCC GAAGAGATTG AGCCTTCCCC TCAAAAAAAT TCTGCGTCAA TGAAGAGCCT TTTCCAAAAA AATAAAATAA
AATTAATTGC TTGTCGACAT TCGAAGACAC CAAATATGGT AGCTCAAGCA ACTGCCAAAA GGTGGTACCG AAATTCAAAC
TTCGCTAAAA AAAAGTTGAG CAAATCCTAC TGTCACATGT CAATCTTCAA TTTCTTGAAC CCATGCTAAA T

>Vigan.06G076100.01
ATGGCGAAAA AGGCAGTGTT GATCGGAATC AACTACCCGG GCACCAAGGC GGAGCTGAAA GGTTGCATAA ACGACGTGTG
GCGGATGCAC CAGTGCCTCG TCGAGCGTTA CGGCTTCTCC GAAGACAACA TCACCGTGTT GATCGACACG GAGAAATCGT
ACACGGAGCC GACGGGGAAG AACATCCGGT CGGCGTTGAC CTCGCTGGTC CGATCGGCGG AGCCCGGAGA CGTGTTCTTC
GTGCACTACA GCGGACACGG AACGCGTCTT CCTGCGGAAA CGGGAGAGGA TGATGACACT GGATTTGATG AATGCATTGT
TCCTGCTGAT ATGAACCTCA TCACTGATGA TGATTTCAGG GAATTTGTTG AGGGGGTCCC TAGTGATTGT AAGCTCACAA
TAGTATCAGA TTCTTGCCAT AGTGGTGGCC TAATTGACGG AGCTAAGGAG CAGATAGGAA ATAGTACGAA GAGAGATGAG
CAACATTCTG GTTCTGGCTT TGGTTTGTCC AGTTTTCTAC GTCGTACTGC GGAGGATGCC ATTGAGTCTC GTGGAATTCA
TATTCCTTCA GCATTGCGCC ATCATAGACA CAAGCATGAT GATGAAACTG ATGATAGGGA CATTGAACTT CCACATGAGC
AGTATGGCCA TGTAAAAAAT AGGTCATTGC CACTTTCTAC TGTCATAGAG ATACTGAAGC AGAAAACTGG AAAAAGTGAT
ATCGATGTTG GGAAATTGAG ACTTTCACTT TACGATATTT TTGGGGAAGA TGCTAGCCCT AAAGTAAAGA AGTTCATGAA
GGTTATATTG AACAAACTCC AACACGGGGA TGGTGGAAGT GACAAACACG GTGGAATCTT GGGGTTGGTG GGTAGTCTTG
CCCAAGAGTT TATCAAGCAA AAGCTGGATG CTAATGATAA TGGATATGCA AAACCTGCCA TGGAAACACA GGTAGACAGT
AAGTATGAAG CGTATGCTGG ATCAACAAAG CCTCGTCTTC CAGACGGTGG AATTCTGTTG AGCGGTTGTC AGACTGATCA
GACCTCTGCA GATGCAAGTC CAGCCGGTAA TGCTGCCAAT GCTTACGGAG CTTTCAGCAA TGCAATACAG GCTATAATTG
AGGAGACACG TGGTGCAGTC ACAAATCAAG AACTTGTTTT GAAGGCAAGA GAGAAGCTTA AGAGAGGAGG TTTCACCCAA
AGACCAGGAC TCTACTGCAG TGATCACCAT GTTGATGGTT CTTTCGTGTG TTGA

>Vigan.06G076100.01
MAKKAVLIGI NYPGTKAELK GCINDVWRMH QCLVERYGFS EDNITVLIDT EKSYTEPTGK NIRSALTSLV RSAEPGDVFF
VHYSGHGTRL PAETGEDDDT GFDECIVPAD MNLITDDDFR EFVEGVPSDC KLTIVSDSCH SGGLIDGAKE QIGNSTKRDE
QHSGSGFGLS SFLRRTAEDA IESRGIHIPS ALRHHRHKHD DETDDRDIEL PHEQYGHVKN RSLPLSTVIE ILKQKTGKSD
IDVGKLRLSL YDIFGEDASP KVKKFMKVIL NKLQHGDGGS DKHGGILGLV GSLAQEFIKQ KLDANDNGYA KPAMETQVDS
KYEAYAGSTK PRLPDGGILL SGCQTDQTSA DASPAGNAAN AYGAFSNAIQ AIIEETRGAV TNQELVLKAR EKLKRGGFTQ
RPGLYCSDHH VDGSFVC*