GBrowse Details

Vigan.06G082100.01

Basic Information:
Name: Vigan.06G082100.01
Multiple alignment
Variant Information
Position: Chr06:13624993..13629131 (- strand)
Length: 4139
Functional Information:
Description: Similar to peroxisomal 2,4-dienoyl-CoA reductase-like. [XP_004517259.1, Cicer arietinum]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.52,12.91,34.91,46.81,43.29,22.30,48.73,22.65
Arabidopsis thaliana homolog: AT3G12800.1
Automatic updates:
Name: NM_001252863 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal 2,4-dienoyl-CoA reductase-like (LOC100793630), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253332 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal 2,4-dienoyl-CoA reductase-like (LOC100800885), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:13624993..13625347 (- strand)
Length: 355
Type: three_prime_UTR
Position: Chr06:13625348..13625502 (- strand)
Length: 155
Type: CDS
Position: Chr06:13626798..13627020 (- strand)
Length: 223
Type: CDS
Position: Chr06:13627094..13627266 (- strand)
Length: 173
Type: CDS
Position: Chr06:13627682..13627841 (- strand)
Length: 160
Type: CDS
Position: Chr06:13628839..13629024 (- strand)
Length: 186
Type: CDS
Position: Chr06:13629025..13629131 (- strand)
Length: 107
Type: five_prime_UTR


>Vigan.06G082100.01
AATTTATATA TATAAATACA GTGAAAGTGG AGCAAACAGC GATTTCAACA AAGAAAGCAT AGAGACGAAA GGTTTCTCTT
GAGAGAACCC ACAAATCGTT GAATCTTATG GAATCGCCGT TCAAAGCAGG AATTCTGAAA GGGAAGGTGG CTCTGATAAC
AGGAGGAGCC TCTGGAATCG GTTTCGAAAT TTCGACGCAA TTCGGCAAAC ATGGAGCCTC CGTCGCGCTC ATGGGTCGCC
GAAAGCAAGT TCTTCACTCC GCTGTCTCCG TTCTCCAATC CCTCGCCATT CCCGCGGTTG GGTTTGAGGG GGACGTACGG
AAGCAAGAGG ATGCAGAGAG GGTGGTGGAA TCAACGTTTA AGCATTTTGG AAGGATTGAT ATACTTGTGA ATGCTGCGGC
TGGGAACTTC CTGGTGTCGG CAGAGGATCT CTCCCCCAAT GGCTTTCGCA CAGTTTTGGA CATTGATTCT GTTGGCACGT
TCACAATGTG CCGTGAAGCC CTAAAATATC TCAAGAAAGG AGGAGAAGGA AGAAGCAACT CTTGTGGTGG GGGATCAATA
ATAAATATCA GTGCCACCTT GCACTACACA GCTTCTTGGT ACCAAATTCA CGTGTCTGCT GCAAAGGCAG CTGTTGATGC
CACTACAAGA AACTTGGCAC TAGAATGGGG AACAGACTAT GACATTAGAG TCAATGGAAT TGCTCCAGGT CCAATAAGTG
ACACTCCTGG CATGAGTAAA CTAGCTCCCG ACGAAATAAG TAGCAAAGCC AGAGACTATA TGCCACTTTA TAAACTTGGG
GAGAAATGGG ATATAGCCAT GACTGCACTT TTCCTAGCGT CAGATGCAGG AAAATTCATC AATGGCGACG TTGTGATAGT
TGACGGAGGA CTTTGGCTGA GCCGGCCTCG TCATTTAGCA AAAGAGGCTG TGAAGCAAGT ATCTCGATCA GTAGAAAAGA
GATCAAGAAA TGCACCAGTT GGTGTTCCAA AAAGCAAGCT CTGAACCACC ACATTCAGGT TTTAGCTCCT TTACACAACG
GGAATCATTC TATGATACTT ATAATGTGTT ACTTTTAAAT TATTAAATCA ATTAATGATT TGTAGAAAAT TATGGATATG
GAAGCCATGA TGTGTTAATT TTCAATTGTT AAACAGGTGA ATTTTCTCAA ATTGTAGAAC TCAAAATAAA ATTAAGCTGT
GATTCCCTTT ATTATAATTC ATATACATTG TCTTATCTTC AACACTTACA CAACTCTAGC TGTACCTTAG GCTCAACTCC
TCTTTTACCT CCTAGTCAAT ACTTTTACAT TTTAAAAAAA TATTTTTAAT CTCTGAACTT TAATATATTC ATCTTTAAA

>Vigan.06G082100.01
ATGGAATCGC CGTTCAAAGC AGGAATTCTG AAAGGGAAGG TGGCTCTGAT AACAGGAGGA GCCTCTGGAA TCGGTTTCGA
AATTTCGACG CAATTCGGCA AACATGGAGC CTCCGTCGCG CTCATGGGTC GCCGAAAGCA AGTTCTTCAC TCCGCTGTCT
CCGTTCTCCA ATCCCTCGCC ATTCCCGCGG TTGGGTTTGA GGGGGACGTA CGGAAGCAAG AGGATGCAGA GAGGGTGGTG
GAATCAACGT TTAAGCATTT TGGAAGGATT GATATACTTG TGAATGCTGC GGCTGGGAAC TTCCTGGTGT CGGCAGAGGA
TCTCTCCCCC AATGGCTTTC GCACAGTTTT GGACATTGAT TCTGTTGGCA CGTTCACAAT GTGCCGTGAA GCCCTAAAAT
ATCTCAAGAA AGGAGGAGAA GGAAGAAGCA ACTCTTGTGG TGGGGGATCA ATAATAAATA TCAGTGCCAC CTTGCACTAC
ACAGCTTCTT GGTACCAAAT TCACGTGTCT GCTGCAAAGG CAGCTGTTGA TGCCACTACA AGAAACTTGG CACTAGAATG
GGGAACAGAC TATGACATTA GAGTCAATGG AATTGCTCCA GGTCCAATAA GTGACACTCC TGGCATGAGT AAACTAGCTC
CCGACGAAAT AAGTAGCAAA GCCAGAGACT ATATGCCACT TTATAAACTT GGGGAGAAAT GGGATATAGC CATGACTGCA
CTTTTCCTAG CGTCAGATGC AGGAAAATTC ATCAATGGCG ACGTTGTGAT AGTTGACGGA GGACTTTGGC TGAGCCGGCC
TCGTCATTTA GCAAAAGAGG CTGTGAAGCA AGTATCTCGA TCAGTAGAAA AGAGATCAAG AAATGCACCA GTTGGTGTTC
CAAAAAGCAA GCTCTGA

>Vigan.06G082100.01
MESPFKAGIL KGKVALITGG ASGIGFEIST QFGKHGASVA LMGRRKQVLH SAVSVLQSLA IPAVGFEGDV RKQEDAERVV
ESTFKHFGRI DILVNAAAGN FLVSAEDLSP NGFRTVLDID SVGTFTMCRE ALKYLKKGGE GRSNSCGGGS IINISATLHY
TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP GPISDTPGMS KLAPDEISSK ARDYMPLYKL GEKWDIAMTA
LFLASDAGKF INGDVVIVDG GLWLSRPRHL AKEAVKQVSR SVEKRSRNAP VGVPKSKL*