VIGGS:GBrowse

Vigan.06G098700.01

Basic Information:

Name:	Vigan.06G098700.01 Multiple alignment Variant Information
Position:	Chr06:18179658..18181554 (+ strand)
Length:	1897

Functional Information:

Description:	Similar to Gb\|AAF02153.1. [Q9FIV1, Arabidopsis thaliana]
InterPro:	Protein of unknown function DUF538 (IPR007493)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.30,1.59,11.16,43.00,24.85,115.72,17.97,55.87
Arabidopsis thaliana homolog:	AT5G54530.1

Structure :

[show][hide]Parts:

Position:	Chr06:18179658..18179840 (+ strand)
Length:	183
Type:	five_prime_UTR

Position:	Chr06:18179841..18180279 (+ strand)
Length:	439
Type:	CDS

Position:	Chr06:18181201..18181253 (+ strand)
Length:	53
Type:	CDS

Position:	Chr06:18181254..18181554 (+ strand)
Length:	301
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G098700.01
CAACTAGAAT CAAACCACAA AAGCCATCAA ACACAACACA ACACAACCAA GGGCGGGATT GTCATTCCAC ACCCTCTAAC
CTTTTCTTAA ACAGTCTCTA CATTTTCCAG CCTCATCAAA AGAACCACCT TAACTTAAGC CCCCTCATGT TCTTTTCTCT
TTTTGGTCTA AGCAAGCAGC ACCATGGGAG CACCAATCTT TAACACTCCC TCCTTCACAC TCTTTGTTTT TCTCTCTCTC
CAACTTTATC TCTCTTTGTC GTCCTCTCCC TCCATCCATG ACCTTCTCCG TTCCAAAGGA CTACCCCCTG GTCTCTTGCC
AGAAGAGGTA AAGTCCTACA CTTTCTCCCA AAATGGCCAC TTGGAAGTGT TCCTAGACGC ACCTTGCTTG ACCAAGTACG
AGAACAGAGT CCTCTTTGAG CAAGTCGTCA CTGCCAACCT CACCTATGGT AGCCTCATAG GAGTTGAGGG TCTCCAACAA
GAAGAACTCT TTGTCTGGCT CCCTGTCAAG GACATAATCG TAAACGACCC TTCTTCAGGG TTGATACTCT TTGACATTGG
CCTTGCCCAC AAACAACTCT CTCTCTCCCT CTTTGAAGAT CCACCTCACT GCAAGCCCGA AGGTGGGTTG AGGAATCATG
TGAGGAAGGA AAAAGGTTTG GAGGTCCTGA GGTAGAAAAA GATGCCACCC TGTGTTTCAG GCTTCACTTG TTGTCTTTTT
CTATGTCATG TTTATATAAT TTTAGCCTTG CAATGCAACT ATAGTTAATG AGTAGGTGCT TGAAGCGTAG AGGTTGAGCA
TGTAAAAATG TGAAGAGAGA GAGAGAGAGA AAAAAAAACT AAGGAATCTG ATGTCGTAAT CAAATTTACA AGTTGTAATT
TTCTTCTAAC TTTTGTGCAT TATATTCACC GGTTATTGCA ATGTTGTTCT GTTTTTAGAT TAAAAGAAAA GAAGATATGA
TAAGTTTCAA AGCAAA

[show][hide][copy]CDS

>Vigan.06G098700.01
ATGGGAGCAC CAATCTTTAA CACTCCCTCC TTCACACTCT TTGTTTTTCT CTCTCTCCAA CTTTATCTCT CTTTGTCGTC
CTCTCCCTCC ATCCATGACC TTCTCCGTTC CAAAGGACTA CCCCCTGGTC TCTTGCCAGA AGAGGTAAAG TCCTACACTT
TCTCCCAAAA TGGCCACTTG GAAGTGTTCC TAGACGCACC TTGCTTGACC AAGTACGAGA ACAGAGTCCT CTTTGAGCAA
GTCGTCACTG CCAACCTCAC CTATGGTAGC CTCATAGGAG TTGAGGGTCT CCAACAAGAA GAACTCTTTG TCTGGCTCCC
TGTCAAGGAC ATAATCGTAA ACGACCCTTC TTCAGGGTTG ATACTCTTTG ACATTGGCCT TGCCCACAAA CAACTCTCTC
TCTCCCTCTT TGAAGATCCA CCTCACTGCA AGCCCGAAGG TGGGTTGAGG AATCATGTGA GGAAGGAAAA AGGTTTGGAG
GTCCTGAGGT AG

[show][hide][copy]PROTEIN

>Vigan.06G098700.01
MGAPIFNTPS FTLFVFLSLQ LYLSLSSSPS IHDLLRSKGL PPGLLPEEVK SYTFSQNGHL EVFLDAPCLT KYENRVLFEQ
VVTANLTYGS LIGVEGLQQE ELFVWLPVKD IIVNDPSSGL ILFDIGLAHK QLSLSLFEDP PHCKPEGGLR NHVRKEKGLE
VLR*