GBrowse Details

Vigan.06G102700.01

Basic Information:
Name: Vigan.06G102700.01
Multiple alignment
Variant Information
Position: Chr06:19321275..19325284 (+ strand)
Length: 4010
Functional Information:
Description: Similar to transcription factor ILR3-like. [XP_004505433.1, Cicer arietinum]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:65.15,35.29,37.84,40.12,103.06,67.84,33.85,37.91
Arabidopsis thaliana homolog: AT5G54680.1
Automatic updates:
Name: KT031119 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_12 bHLH transcription factor (Glyma12g16560.1) mRNA, complete cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001354890 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bHLH transcription factor (LOC100783689), mRNA.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:19321275..19321411 (+ strand)
Length: 137
Type: five_prime_UTR
Position: Chr06:19321412..19321551 (+ strand)
Length: 140
Type: CDS
Position: Chr06:19322970..19323032 (+ strand)
Length: 63
Type: CDS
Position: Chr06:19323624..19323701 (+ strand)
Length: 78
Type: CDS
Position: Chr06:19323813..19323975 (+ strand)
Length: 163
Type: CDS
Position: Chr06:19324509..19324775 (+ strand)
Length: 267
Type: CDS
Position: Chr06:19324776..19325284 (+ strand)
Length: 509
Type: three_prime_UTR


>Vigan.06G102700.01
TACGCACACC ACACACCTAC GCACACCACA CACCTACGCA CACCACGCGC AGCCCCTGTT TGTTTTCCAG GAAAACAAAG
CAAAAACGCG TTTTCCGTGC GGAAAATCCT CAATTTTCCG GGAATCGAAT CTGCACAATG GTTTCCCGGG AAAACACCAA
TTGGCTCTTT GATTACGGCT TGATAGATGA TATTCCCGTC CCGGATGCCT CCTTCACCGT CCCTTCCTCC GGCTTCACAT
GGCCTCCTAA TGCCTTGAAT GCCACTTCCA ATGTCGGTGT TGAAGCTGAC GGTTCACTGG TGGATTCTGA TGGTCTCAAA
GAGTCTGGCT CAAAGAAGAG GGTTAGATCT GAGACATGTG CTGCTTCTAG CACCAAGGCA TGTCGGGAGA AGTTGCGAAG
AGATAAGCTT AACGACAAGT TTGTTGAATT GGGCTCCATT TTGGAGCCTG GAAGGCCTAC GAAAACTGAT AAGGCTGCTA
TCCTGATTGA TGCTGTCCGT ATGGTGACAC ACTTACGGGG TGAAGCGCAG AAGTTGAAAG ACTCTAATCA GGGTCTTCAA
GAAAAGATTA AAGAGTTAAA GGCTGAGAAG AATGAACTTA GGGATGAGAA ACAGGTGCTC AAGGCAGAGA AGGAGAAGTT
GGAGCAGCAG CTGAAATCTT TGAATGCACA ACCCAGTTTC ATGCCTCCCC CTGCTGCTAT CCCTGCTGCA TTTGCGGCGC
AAGGCCAAGC CCACGGAAAC AAGTTGGTAC CTTTTATTAG TTATCCTGGA GTTGCAATGT GGCAATTTAT GCCACCTGCT
GCAGTGGATA CCTCACAGGA TCACGTACTC CGTCCACCAG TTGCCTAAGC TGGCACTGTA CAATTCTCTG AGCTTGCATT
TTGGCCCAGA GTTGTATCCA TTTTACCAAT ACCTTCTTGG CTTTGTTAGT TCTCTTCCAA GTATTCTAAC TGGACCCAGT
GGTGACAACG GTCTGTATTT GGCATATGAT ACTATTATGA TTAATGTTGT TATTTGCTTG TAAATGTTAA ATAAGCTTGT
CTGTCTAGCT GTCCTCGTCT CAGTTTTAAT ACTAGCTACT GGATTCTAAG ATAATCCGAT TTTAGGTTCA CAGTAACATT
ATTTCAGCTT AGGCCATGCA AAATAGGTGA GAGGGCATTG TTGCTAGTAG AAGATATAGA TAGGTTTTAA CAATCGAGGA
AGCAACAGAG CTATAGTGCT CCAGTTTTCA ATTTAGTGCT GCCATATTTC CTTACGCAAG CAAAGATTGT TAACTTACAT
TATCCAAAAT CTCTGCTGAA TTATTTAGAC AATGGTAATT AAATCCATAA AAAAAGTTTT AATGACAATA CATAAGA

>Vigan.06G102700.01
ATGGTTTCCC GGGAAAACAC CAATTGGCTC TTTGATTACG GCTTGATAGA TGATATTCCC GTCCCGGATG CCTCCTTCAC
CGTCCCTTCC TCCGGCTTCA CATGGCCTCC TAATGCCTTG AATGCCACTT CCAATGTCGG TGTTGAAGCT GACGGTTCAC
TGGTGGATTC TGATGGTCTC AAAGAGTCTG GCTCAAAGAA GAGGGTTAGA TCTGAGACAT GTGCTGCTTC TAGCACCAAG
GCATGTCGGG AGAAGTTGCG AAGAGATAAG CTTAACGACA AGTTTGTTGA ATTGGGCTCC ATTTTGGAGC CTGGAAGGCC
TACGAAAACT GATAAGGCTG CTATCCTGAT TGATGCTGTC CGTATGGTGA CACACTTACG GGGTGAAGCG CAGAAGTTGA
AAGACTCTAA TCAGGGTCTT CAAGAAAAGA TTAAAGAGTT AAAGGCTGAG AAGAATGAAC TTAGGGATGA GAAACAGGTG
CTCAAGGCAG AGAAGGAGAA GTTGGAGCAG CAGCTGAAAT CTTTGAATGC ACAACCCAGT TTCATGCCTC CCCCTGCTGC
TATCCCTGCT GCATTTGCGG CGCAAGGCCA AGCCCACGGA AACAAGTTGG TACCTTTTAT TAGTTATCCT GGAGTTGCAA
TGTGGCAATT TATGCCACCT GCTGCAGTGG ATACCTCACA GGATCACGTA CTCCGTCCAC CAGTTGCCTA A

>Vigan.06G102700.01
MVSRENTNWL FDYGLIDDIP VPDASFTVPS SGFTWPPNAL NATSNVGVEA DGSLVDSDGL KESGSKKRVR SETCAASSTK
ACREKLRRDK LNDKFVELGS ILEPGRPTKT DKAAILIDAV RMVTHLRGEA QKLKDSNQGL QEKIKELKAE KNELRDEKQV
LKAEKEKLEQ QLKSLNAQPS FMPPPAAIPA AFAAQGQAHG NKLVPFISYP GVAMWQFMPP AAVDTSQDHV LRPPVA*