GBrowse Details

Vigan.06G104300.01

Basic Information:
Name: Vigan.06G104300.01
Multiple alignment
Variant Information
Position: Chr06:19665421..19671831 (- strand)
Length: 6411
Functional Information:
Description: Similar to trafficking protein particle complex subunit 3-like isoform X3. [XP_004505442.1, Cicer arietinum]
InterPro: Transport protein particle (TRAPP) component (IPR007194)
TRAPP I complex, Bet3 (IPR016721)
NO signalling/Golgi transport ligand-binding domain (IPR024096)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:33.00,38.31,44.64,31.18,57.38,80.32,72.38,35.91
Arabidopsis thaliana homolog: AT5G54750.2
Automatic updates:
Name: NM_001248628 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max trafficking protein particle complex subunit 3-like (LOC100306217), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249856 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499843 (LOC100499843), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:19665421..19665648 (- strand)
Length: 228
Type: three_prime_UTR
Position: Chr06:19665649..19665771 (- strand)
Length: 123
Type: CDS
Position: Chr06:19666368..19666550 (- strand)
Length: 183
Type: CDS
Position: Chr06:19670725..19670824 (- strand)
Length: 100
Type: CDS
Position: Chr06:19671300..19671397 (- strand)
Length: 98
Type: CDS
Position: Chr06:19671638..19671694 (- strand)
Length: 57
Type: CDS
Position: Chr06:19671695..19671831 (- strand)
Length: 137
Type: five_prime_UTR


>Vigan.06G104300.01
TTGAAACAAT TATGAATGAA GGTTGGAGTG CAAAAACACT GGGGTTGTTG TGGGCACTGA TCCAAGGTCG TACATCTTTG
CTCAACTCAT CGCCAAGCAG ATCGCAGCAA AGCAGATTCT GAGAGTGAAC TCCGACAATG CCTCCCGTCG CTCCTCGATC
CGGCGATGCC ATATTCGCCA ACATCGAACG CGTTAACGCA GAGCTGTTTA CTTTGACTTA TGGTGCAATT GTGCGTCAAT
TGCTCACGGA TCTGGAAGAG GTTGAGGAGG TTAACAAGCA GCTTGATCAA ATGGGTTATA ATATTGGAAT CCGTTTGATT
GATGAGTTTT TAGCTAAGTC TAATGTCTCA AGATGCAACG ATTTCAGAGA GACTACTGAT GTAATTGCAA AGGTTGGTTT
TAAAATGTTC CTCGGTGTTA CTGCATCTGT GACCAATTGG GATGCTGATG GGACATGTTG TAGTATTGTC TTGGAGGATA
ATCCTTTGGT AGATTTTGTT GAACTTCCTG ACAACTGCCA AGGTCTGTAC TATTGCAACA TCTTAAGTGG AGTCATTAGA
GGAGCCTTAG ATATGGTGTC AATGAAGACT GAGGTAACTT GGCTCCGAGA TGTGCTTCGA GGCGATGATG TGTTTGAGTT
GCAGGTAAAA CTTCTCAAGC ATGTTCCAGA AGAGTATCCA TACAAAGATG ATGAGTGAAT TTGTTTTTGT AGTGTTGTAT
ACTCGATATT TTTATTACTT CATTGCTGCA GTATTAGATT GCCATATTCT GACTTGTCCT ATGTGTATTT TGATGAAACA
CTATATACAG TAGAAAATCT TTAATTAAAT CATTATCATA TTGGTTTTGA TAGTGAGCTA CAATCTACAT GATTTCTAAG
GGACCTTTAG ATTTTGAGTT CTTATTATTT TTCTCATTAC ATGATA

>Vigan.06G104300.01
ATGCCTCCCG TCGCTCCTCG ATCCGGCGAT GCCATATTCG CCAACATCGA ACGCGTTAAC GCAGAGCTGT TTACTTTGAC
TTATGGTGCA ATTGTGCGTC AATTGCTCAC GGATCTGGAA GAGGTTGAGG AGGTTAACAA GCAGCTTGAT CAAATGGGTT
ATAATATTGG AATCCGTTTG ATTGATGAGT TTTTAGCTAA GTCTAATGTC TCAAGATGCA ACGATTTCAG AGAGACTACT
GATGTAATTG CAAAGGTTGG TTTTAAAATG TTCCTCGGTG TTACTGCATC TGTGACCAAT TGGGATGCTG ATGGGACATG
TTGTAGTATT GTCTTGGAGG ATAATCCTTT GGTAGATTTT GTTGAACTTC CTGACAACTG CCAAGGTCTG TACTATTGCA
ACATCTTAAG TGGAGTCATT AGAGGAGCCT TAGATATGGT GTCAATGAAG ACTGAGGTAA CTTGGCTCCG AGATGTGCTT
CGAGGCGATG ATGTGTTTGA GTTGCAGGTA AAACTTCTCA AGCATGTTCC AGAAGAGTAT CCATACAAAG ATGATGAGTG
A

>Vigan.06G104300.01
MPPVAPRSGD AIFANIERVN AELFTLTYGA IVRQLLTDLE EVEEVNKQLD QMGYNIGIRL IDEFLAKSNV SRCNDFRETT
DVIAKVGFKM FLGVTASVTN WDADGTCCSI VLEDNPLVDF VELPDNCQGL YYCNILSGVI RGALDMVSMK TEVTWLRDVL
RGDDVFELQV KLLKHVPEEY PYKDDE*