GBrowse Details

Vigan.06G104500.01

Basic Information:
Name: Vigan.06G104500.01
Multiple alignment
Variant Information
Position: Chr06:19731121..19734814 (+ strand)
Length: 3694
Functional Information:
Description: Similar to Thiamine thiazole synthase, chloroplastic. [V7AJ94, Phaseolus vulgaris]
GO: Biological Process: response to stress (GO:0006950)
Biological Process: thiamine biosynthetic process (GO:0009228)
InterPro: Thiazole biosynthetic enzyme Thi4 family (IPR002922)
Thiamine thiazole synthase (IPR027495)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.88,14.73,21.11,27.63,3981.37,256.38,3.44,12.05
Arabidopsis thaliana homolog: AT5G54770.1
Automatic updates:
Name: NM_001249883 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thiamin biosynthetic enzyme (SC-04), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249895 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thiamin biosynthetic enzyme (SC-03), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:19731121..19731497 (+ strand)
Length: 377
Type: five_prime_UTR
Position: Chr06:19731498..19731899 (+ strand)
Length: 402
Type: CDS
Position: Chr06:19733709..19734197 (+ strand)
Length: 489
Type: CDS
Position: Chr06:19734426..19734590 (+ strand)
Length: 165
Type: CDS
Position: Chr06:19734591..19734814 (+ strand)
Length: 224
Type: three_prime_UTR


>Vigan.06G104500.01
TAATACTAAA GACAAAATAT ATTTTTCTAA ACACAAAAAA AAAACATAAT CACATGACAA CAGAAATAGT TGTTTAATCA
TTTTACTACT TTGCAACGGA GATATTTCCA CATAAGATGA GTGTGGTCAC AGTTGCTGCA ACAGTGCCAA ACAGTGGTTG
CTTCGGAAAA CAGAAAACTC TGCACCTTTG ATTTCCAACA AAATTCCACG TGTCTTCCAT GCACACCATC AAAGAACAGT
TCTCACAAAC TTTCTCTCTC CATTTCTGAT TTGTCACCTT TGAAACTTTT CCATTCTTGC AAACTACTCT CCTCAATAAA
TACCACACTC TCCAGACCAA AACCACATCT CACACTTTCA CTTATTGATT CTTTTTCATG GCTTCCACAA TCACCTCCTC
CTCCTTATTC TCTGCCTCCA TTCTCTCTCC ACCCTCTTCA TCCCTCTTGT CCACCAAACC CACCCATGCC ACCCCCACTC
CCCGCTTCCA CGCGCCTCGC GCGTCTATGT CCGTCGCTTC CCCACCCCCT TACGACTTGT CTTCTTTCAG GTTCCAGCCA
ATCAAGGAGT CGATTGTGTC ACGTGAGATG ACGCGCCGCT ACATGACCGA CATGGTCACA CATGCTGACA CTGATGTTGT
CATCATCGGT GCTGGGTCTG CGGGACTTTC CTGTGCCTAT GAACTCAGCA AGAACCCTTC CGTTAATGTT GCCATTATCG
AACAGTCCGT CAGTCCCGGT GGCGGCGCGT GGCTCGGTGG CCAGCTCTTC TCCGCCATGA TAGTGCGTAA GCCAGCACAT
CTTTTCCTTG ACGAGCTCGG TCTTGAGTAT GACGAGCAAG ATAACTACGT GGTGATCAAG CACGCTGCAC TGTTCACATC
GACCATCATG AGCAAGCTGT TGGCTAGGCC AAACGTGAAG CTCTTCAATG CCGTAGCAGC TGAGGATTTG ATCGTGAAGA
ATGGAAGAGT TGGTGGTGTT GTCACTAACT GGGCCTTGGT TTCCATGAAC CATGACACTC AATCCTGCAT GGACCCCAAT
GTGATGGAGG CTAAAGTGGT GGTGAGTTCT TGTGGGCATG ATGGACCCTT TGGAGCCACT GGTGTGAAGA GGCTCAAAAG
CATTGGCTTG ATTGATAATG TGCCAGGAAT GAAGGCCCTT GACATGAACA TGGCTGAGGA TGCCATTGTG AGACTCACTA
GAGAAATTGT TCCTGGCATG ATTGTTACTG GAATGGAAGT TGCTGAGATT GATGGTGCTC CAAGAATGGG TCCAACCTTT
GGAGCAATGA TGATATCAGG GCAGAAAGCA GCTCATCTGG CTTTGAGATC TTTGAAACTT CCCAGTGCTT TGGAATCTGT
GGGAAATGTT CATCCTGAGC TTGTCCTAGC TGCTGCTGCT GCTGCCGAAT CTGTTGAAAT CGCAGATGCT TAAATCAATG
TTGCATTGAA TTTAACTTGG TTGTATTATC CATGCTTGGA ACTAGAAATA AGTAGTTCAA ACATTAAGCT TTTAAGATGT
TGGTAGTGAT GAATTGGAGT GGTTGATTAG ACTCTATGAG CTTCTTGGTA ATATCATGAA TTATGTTTGT CAACTCGTTT
TTTTCTCACA ACCTCAAGCT TCTGTTTTAA TGGTCACATT CTTGTGCCAA GTTTCAT

>Vigan.06G104500.01
ATGGCTTCCA CAATCACCTC CTCCTCCTTA TTCTCTGCCT CCATTCTCTC TCCACCCTCT TCATCCCTCT TGTCCACCAA
ACCCACCCAT GCCACCCCCA CTCCCCGCTT CCACGCGCCT CGCGCGTCTA TGTCCGTCGC TTCCCCACCC CCTTACGACT
TGTCTTCTTT CAGGTTCCAG CCAATCAAGG AGTCGATTGT GTCACGTGAG ATGACGCGCC GCTACATGAC CGACATGGTC
ACACATGCTG ACACTGATGT TGTCATCATC GGTGCTGGGT CTGCGGGACT TTCCTGTGCC TATGAACTCA GCAAGAACCC
TTCCGTTAAT GTTGCCATTA TCGAACAGTC CGTCAGTCCC GGTGGCGGCG CGTGGCTCGG TGGCCAGCTC TTCTCCGCCA
TGATAGTGCG TAAGCCAGCA CATCTTTTCC TTGACGAGCT CGGTCTTGAG TATGACGAGC AAGATAACTA CGTGGTGATC
AAGCACGCTG CACTGTTCAC ATCGACCATC ATGAGCAAGC TGTTGGCTAG GCCAAACGTG AAGCTCTTCA ATGCCGTAGC
AGCTGAGGAT TTGATCGTGA AGAATGGAAG AGTTGGTGGT GTTGTCACTA ACTGGGCCTT GGTTTCCATG AACCATGACA
CTCAATCCTG CATGGACCCC AATGTGATGG AGGCTAAAGT GGTGGTGAGT TCTTGTGGGC ATGATGGACC CTTTGGAGCC
ACTGGTGTGA AGAGGCTCAA AAGCATTGGC TTGATTGATA ATGTGCCAGG AATGAAGGCC CTTGACATGA ACATGGCTGA
GGATGCCATT GTGAGACTCA CTAGAGAAAT TGTTCCTGGC ATGATTGTTA CTGGAATGGA AGTTGCTGAG ATTGATGGTG
CTCCAAGAAT GGGTCCAACC TTTGGAGCAA TGATGATATC AGGGCAGAAA GCAGCTCATC TGGCTTTGAG ATCTTTGAAA
CTTCCCAGTG CTTTGGAATC TGTGGGAAAT GTTCATCCTG AGCTTGTCCT AGCTGCTGCT GCTGCTGCCG AATCTGTTGA
AATCGCAGAT GCTTAA

>Vigan.06G104500.01
MASTITSSSL FSASILSPPS SSLLSTKPTH ATPTPRFHAP RASMSVASPP PYDLSSFRFQ PIKESIVSRE MTRRYMTDMV
THADTDVVII GAGSAGLSCA YELSKNPSVN VAIIEQSVSP GGGAWLGGQL FSAMIVRKPA HLFLDELGLE YDEQDNYVVI
KHAALFTSTI MSKLLARPNV KLFNAVAAED LIVKNGRVGG VVTNWALVSM NHDTQSCMDP NVMEAKVVVS SCGHDGPFGA
TGVKRLKSIG LIDNVPGMKA LDMNMAEDAI VRLTREIVPG MIVTGMEVAE IDGAPRMGPT FGAMMISGQK AAHLALRSLK
LPSALESVGN VHPELVLAAA AAAESVEIAD A*