VIGGS:GBrowse

Vigan.06G104900.01

Basic Information:

Name:	Vigan.06G104900.01 Multiple alignment Variant Information
Position:	Chr06:19785969..19787152 (+ strand)
Length:	1184

Functional Information:

Description:	Similar to early nodulin-like protein 1-like. [XP_004505446.1, Cicer arietinum]
GO:	Molecular Function: copper ion binding (GO:0005507)
GO:	Molecular Function: electron carrier activity (GO:0009055)
InterPro:	Plastocyanin-like (IPR003245)
InterPro:	Cupredoxin (IPR008972)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:2.95,2.35,37.69,12.92,3.19,16.86,24.65,54.09

Automatic updates:

Name:	NM_001255447 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max early nodulin-like protein (LOC100781182), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:19785969..19786050 (+ strand)
Length:	82
Type:	five_prime_UTR

Position:	Chr06:19786051..19786252 (+ strand)
Length:	202
Type:	CDS

Position:	Chr06:19786502..19786944 (+ strand)
Length:	443
Type:	CDS

Position:	Chr06:19786945..19787152 (+ strand)
Length:	208
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G104900.01
ATCTCTCCAA CCAACTTTTC TAGCATTTGG GTTGCAAATT GCAATACCAA CTTTCCATTT GCAAAATCTT TGAGATCTTC
CAATGGCCAC ATTCATCTTT AGGTCTAACA AAGCAGTGCA TGCCTTTGTT GGCTGTCTTT GTCTTCTGCT GATGGTTCAA
AAGGGTGCTT CCTATGATTT TGTAGTTGGT GGCCAAAAGG GTTGGAGTGT TCCCAATGAT CCCACTTTCA ATCCTTTCAA
TCAATGGGCA GAAAAGAGCC GTTTTCAAGT TGGAGACTCC CTTGTGTTCA ACTACCAATC TGGCCAAGAC TCAGTGCTGT
ATGTAAAGAG TGAAGACTAT GCGAGCTGCA ACACCGATTC ACCTTATTCA AAATTCTCTG ATGGCCATAC AGTCTTCAAG
CTAGACAAAT CAGGGCCTCA CTTTTTCATA AGTGGAAGCA AAGACAACTG CCTGAAAAAT GAAAAGTTAA CAGTGATTGT
GCTTGCTGAA AGGAACAAAA ACAGCAACCA AAGCACCAAT GCTTCTCCAC CTTCACCACA ATCATCATCT TCATCACCAC
CACCTACTAC TGGGCAAGAG GGTCAATCTC CAACTTCAGA CACAAACCAA ACACCAAGCC CTGTTAGTGA ACCTCCACCT
CCCAATGCTG CTGCTTCAGC CTTTCTCTCT CTTGCTGGCT CTGTTGGAGC ATTCATGGTT TCAGTCATCA TGCTTTTATC
TTTCTAAGAA TTTATGAGTG GTTGAGGATT GATTTCGTCT TTTTTTTTCT TTTCCATACA ATTCTTTTTT ATTTTTTCAT
TTTTCTGTTC TTTGTTTCCT ATGCTTTGAG GTAAGAACTA CTGAACTTGC TGGTCTTTGG TTCAAAGTTG GGATGTTTGA
TATATATTTG TGAAGATTGA ATAATAATAA TAATGAGCTG ACAGTGATTG ATTTA

[show][hide][copy]CDS

>Vigan.06G104900.01
ATGGCCACAT TCATCTTTAG GTCTAACAAA GCAGTGCATG CCTTTGTTGG CTGTCTTTGT CTTCTGCTGA TGGTTCAAAA
GGGTGCTTCC TATGATTTTG TAGTTGGTGG CCAAAAGGGT TGGAGTGTTC CCAATGATCC CACTTTCAAT CCTTTCAATC
AATGGGCAGA AAAGAGCCGT TTTCAAGTTG GAGACTCCCT TGTGTTCAAC TACCAATCTG GCCAAGACTC AGTGCTGTAT
GTAAAGAGTG AAGACTATGC GAGCTGCAAC ACCGATTCAC CTTATTCAAA ATTCTCTGAT GGCCATACAG TCTTCAAGCT
AGACAAATCA GGGCCTCACT TTTTCATAAG TGGAAGCAAA GACAACTGCC TGAAAAATGA AAAGTTAACA GTGATTGTGC
TTGCTGAAAG GAACAAAAAC AGCAACCAAA GCACCAATGC TTCTCCACCT TCACCACAAT CATCATCTTC ATCACCACCA
CCTACTACTG GGCAAGAGGG TCAATCTCCA ACTTCAGACA CAAACCAAAC ACCAAGCCCT GTTAGTGAAC CTCCACCTCC
CAATGCTGCT GCTTCAGCCT TTCTCTCTCT TGCTGGCTCT GTTGGAGCAT TCATGGTTTC AGTCATCATG CTTTTATCTT
TCTAA

[show][hide][copy]PROTEIN

>Vigan.06G104900.01
MATFIFRSNK AVHAFVGCLC LLLMVQKGAS YDFVVGGQKG WSVPNDPTFN PFNQWAEKSR FQVGDSLVFN YQSGQDSVLY
VKSEDYASCN TDSPYSKFSD GHTVFKLDKS GPHFFISGSK DNCLKNEKLT VIVLAERNKN SNQSTNASPP SPQSSSSSPP
PTTGQEGQSP TSDTNQTPSP VSEPPPPNAA ASAFLSLAGS VGAFMVSVIM LLSF*