VIGGS:GBrowse

Vigan.06G106600.01

Basic Information:

Name:	Vigan.06G106600.01 Multiple alignment Variant Information
Position:	Chr06:20124343..20125187 (+ strand)
Length:	845

Functional Information:

Description:	Similar to dynein light chain 2, cytoplasmic-like. [XP_004510015.1, Cicer arietinum]
GO:	Biological Process: microtubule-based process (GO:0007017)
GO:	Cellular Component: microtubule associated complex (GO:0005875)
InterPro:	Dynein light chain, type 1/2 (IPR001372)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.14,0.10,4.64,48.46,0.00,1.04,0.12,11.18
Arabidopsis thaliana homolog:	AT4G27360.1

Automatic updates:

Name:	NM_001249698 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527224 (LOC100527224), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:20124343..20124553 (+ strand)
Length:	211
Type:	five_prime_UTR

Position:	Chr06:20124554..20124691 (+ strand)
Length:	138
Type:	CDS

Position:	Chr06:20124838..20125029 (+ strand)
Length:	192
Type:	CDS

Position:	Chr06:20125030..20125187 (+ strand)
Length:	158
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G106600.01
TGACCACAAA GGCAATCCAT ACGTGGCTGA CCAATTAGCA CTACCCGTTT TCATCTGATT CTATATAATA CCTCCATTCA
TTACCCTTTA ATCTGCACTT TACATCCCTT TTTTACAAGA AACTACTTTT GCTTTATATC TGTGATTTAT TTTAAGCTCC
ATCAGTTCCA ACTTTGTTGT TTGGTGAGGA AATTTTTCGC TTTGGTTCAT CATGCTTGAA GGCAAGGCTG TGATTGGTGA
GACTGACATG CTTCAGACCA TGCAGCAAGA CGCCATGGAT TTAGCTTCCA AAGCACTTGA TGTCTTTGAT GTCACTGAAG
CCATTGAGAT TGCCAGATTT ATAAAGAAGG AATTTGATAG GATGCATGGA CCTGGTTGGC AGTGTATTGT AGGAACTGAT
TTTGGTTCAT TTGTGACCCA CTGTTGTGGC TGTTTTATCT ATTTCTGTTT AGGTAACTTA GCCATTTTGC TCTTCAGGGG
CTCAGCTGCT CCAGAGGCAC ATGAAAATCA GTTCTCAGCT CTAGAGGCAG CCAAAGCATA ATTAATTTAA TTGCTTAATT
TTCCCTTTGT TTAGATACTT CTGTATTTTT TTTTCATTCC ATGTAATGAT AATTGATTTA GGAAGAAATG AAGGTTTGAG
AGAGAAACAA TTTGCCAGAG GTAATATAAA TTATAATTTT GTTACTGAAA TATATTTTA

[show][hide][copy]CDS

>Vigan.06G106600.01
ATGCTTGAAG GCAAGGCTGT GATTGGTGAG ACTGACATGC TTCAGACCAT GCAGCAAGAC GCCATGGATT TAGCTTCCAA
AGCACTTGAT GTCTTTGATG TCACTGAAGC CATTGAGATT GCCAGATTTA TAAAGAAGGA ATTTGATAGG ATGCATGGAC
CTGGTTGGCA GTGTATTGTA GGAACTGATT TTGGTTCATT TGTGACCCAC TGTTGTGGCT GTTTTATCTA TTTCTGTTTA
GGTAACTTAG CCATTTTGCT CTTCAGGGGC TCAGCTGCTC CAGAGGCACA TGAAAATCAG TTCTCAGCTC TAGAGGCAGC
CAAAGCATAA

[show][hide][copy]PROTEIN

>Vigan.06G106600.01
MLEGKAVIGE TDMLQTMQQD AMDLASKALD VFDVTEAIEI ARFIKKEFDR MHGPGWQCIV GTDFGSFVTH CCGCFIYFCL
GNLAILLFRG SAAPEAHENQ FSALEAAKA*