GBrowse Details

Vigan.06G112600.01

Basic Information:
Name: Vigan.06G112600.01
Multiple alignment
Variant Information
Position: Chr06:21770888..21776262 (+ strand)
Length: 5375
Functional Information:
Description: Similar to Aspartate aminotransferase. [V7AL18, Phaseolus vulgaris]
GO: Biological Process: cellular amino acid metabolic process (GO:0006520)
Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: transaminase activity (GO:0008483)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Aspartate/other aminotransferase (IPR000796)
Aminotransferases, class-I, pyridoxal-phosphate-binding site (IPR004838)
Aminotransferase, class I/classII (IPR004839)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.90,2.78,33.51,20.63,37.57,37.30,33.34,6.45
Arabidopsis thaliana homolog: AT2G30970.1
Automatic updates:
Name: NM_001251401 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aspartate aminotransferase, mitochondrial (LOC547813), mRNA; nuclear gene for mitochondrial product.
PubMed ID: 7766891 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:21770888..21771013 (+ strand)
Length: 126
Type: five_prime_UTR
Position: Chr06:21771014..21771181 (+ strand)
Length: 168
Type: CDS
Position: Chr06:21771549..21771634 (+ strand)
Length: 86
Type: CDS
Position: Chr06:21772869..21773075 (+ strand)
Length: 207
Type: CDS
Position: Chr06:21773219..21773324 (+ strand)
Length: 106
Type: CDS
Position: Chr06:21773447..21773551 (+ strand)
Length: 105
Type: CDS
Position: Chr06:21773640..21773812 (+ strand)
Length: 173
Type: CDS
Position: Chr06:21774556..21774715 (+ strand)
Length: 160
Type: CDS
Position: Chr06:21775313..21775408 (+ strand)
Length: 96
Type: CDS
Position: Chr06:21775643..21775737 (+ strand)
Length: 95
Type: CDS
Position: Chr06:21775835..21775907 (+ strand)
Length: 73
Type: CDS
Position: Chr06:21775908..21776262 (+ strand)
Length: 355
Type: three_prime_UTR


>Vigan.06G112600.01
TGAAAGTTAA GATCTACAAG TGGTGGGACC CACTTGCATT CAATATATAC TCACTGAAGT CACAGCTCGC AGCCAACCCT
CTGCTTTTTG TTCTGTTTCC CTGTTTCCAC GTAACTGAAC TGAGTCATGG CGATTTCGCT CAAAGGAGAA TCTCTCCGCC
GCATCATCGT TGGGACAAGG TTCATGTCAC CTTCGTGGTT TCGGAGTATC GAGCCCGCTC CCAAGGATCC GATCCTCGGA
GTAACTGAAG CTTTCCTCGC CGATCAGAGT CCAAACAAAG TCAACGTCGG AGTGGGTGCG TATCGCGACG ACGACGGAAA
GGCTGTGGTT TTGGAGTGCG TTAGAGAAGC AGAGAGGAGA ATTGCAGGAA ACCAATTCAT GGAGTATCTT CCTATTGGTG
GAAGCATAAA AATGGTTGAA GAATCGCTCA AGCTGGCATA CGGAGACAAC TCTGAGTTCA TCAAGGATAA AAGAATAGCT
GCAGTGCAGG CTTTATCTGG GACTGGTGCA TGTCGACTTT TTGCTGCATT TCAACAGAGA TTTCATCCTA ATTCCCAAAT
CTACATACCA GTGCCTACCT GGGCCAACCA CCATAACATT TGGAGAGATG CTGGAGTGTC TATGAAGACA TTCCGTTACT
ATCATCCAGA GTCTAAAGGA TTGGATTTTG AAGGACTGAT GAACGACATG AAGAATGCTC CAGATGGTTC CTTCTTTCTG
CTTCATGCTT GTGCGCACAA TCCTACTGGA GTAGATCCTT CAGAAGAACA ATGGAGAGAG ATCTCTTCCC AGATTAAGGC
TAAGGGTCAT TTCCCTTTCT TTGACATGGC ATATCAAGGT TTTGCTAGTG GTGATCCAGA GAGAGATGCA AAAGCCATAA
GGATTTTTCT GGAGGACGGT CATTTAATTG GACTAGCTCA GTCATATGCA AAAAATATGG GACTGTACGG CCAGCGAGTT
GGATGCCTGA GTGTGCTCTG TGAAGATGAG AAACAAGCTG TGGCTGTAAA AAGTCAGTTA CAGCTGATTG CAAGACCCAT
GTACAGTAAC CCACCTGTCC ATGGAGCGCT TATAGTTTCA ACTGTTCTTG GAGATCCAGA GTTGAAGAAG TTATGGCTCA
ACGAAGTCAA GGGCATGGCA GATCGCATCA TCGGAATGAG GACCACACTA CGAGAGAACT TGGAAAAGAG GAATTCTCCT
TTGCCCTGGC AGCACATAAC CAATCAGATT GGTATGTTCT GCTACAGTGG ATTGACACCG GAACAGGTTG ATCTTATGAC
AAGCAAGTTT CATATTTACA TGACCCGTAA TGGTCGTATC AGTATGGCTG GTCTTAATAC GGGCAATGTG GGATATGTTG
CTGACGCTAT CCATGAGGTT ACAAAATCTT CCTAAATAAT TCAATTTACC AATTGAACAA TTTTTGGTTT TGGGAGGAAA
GAAGTCTTCT CAGAACTAAA ATAAATATAT ATTCATTTTT ATGAAGCACT CCGATGTGTA TCACCATTTC ATCATTTTTG
TTATTTAGAA CAGTTTAAGT AGCAGATCGG ATGATAGAGC TTATTTATGA CGAACAATAT ATGTTCACTG AAATGTATTA
CTTTCTTAAG AAATGACAGT AGCCAATTTA GAGTGTTTGA ACTTCTTTAG ATAATTAATA TGCTTATGTT TGGCCTATGA
TGTGCAATGC TCTAATCAAA CTGTTGATAC TTTGTTGACA TATTGAGTAG TTAGATCTTG AAAATATCGG 

>Vigan.06G112600.01
ATGGCGATTT CGCTCAAAGG AGAATCTCTC CGCCGCATCA TCGTTGGGAC AAGGTTCATG TCACCTTCGT GGTTTCGGAG
TATCGAGCCC GCTCCCAAGG ATCCGATCCT CGGAGTAACT GAAGCTTTCC TCGCCGATCA GAGTCCAAAC AAAGTCAACG
TCGGAGTGGG TGCGTATCGC GACGACGACG GAAAGGCTGT GGTTTTGGAG TGCGTTAGAG AAGCAGAGAG GAGAATTGCA
GGAAACCAAT TCATGGAGTA TCTTCCTATT GGTGGAAGCA TAAAAATGGT TGAAGAATCG CTCAAGCTGG CATACGGAGA
CAACTCTGAG TTCATCAAGG ATAAAAGAAT AGCTGCAGTG CAGGCTTTAT CTGGGACTGG TGCATGTCGA CTTTTTGCTG
CATTTCAACA GAGATTTCAT CCTAATTCCC AAATCTACAT ACCAGTGCCT ACCTGGGCCA ACCACCATAA CATTTGGAGA
GATGCTGGAG TGTCTATGAA GACATTCCGT TACTATCATC CAGAGTCTAA AGGATTGGAT TTTGAAGGAC TGATGAACGA
CATGAAGAAT GCTCCAGATG GTTCCTTCTT TCTGCTTCAT GCTTGTGCGC ACAATCCTAC TGGAGTAGAT CCTTCAGAAG
AACAATGGAG AGAGATCTCT TCCCAGATTA AGGCTAAGGG TCATTTCCCT TTCTTTGACA TGGCATATCA AGGTTTTGCT
AGTGGTGATC CAGAGAGAGA TGCAAAAGCC ATAAGGATTT TTCTGGAGGA CGGTCATTTA ATTGGACTAG CTCAGTCATA
TGCAAAAAAT ATGGGACTGT ACGGCCAGCG AGTTGGATGC CTGAGTGTGC TCTGTGAAGA TGAGAAACAA GCTGTGGCTG
TAAAAAGTCA GTTACAGCTG ATTGCAAGAC CCATGTACAG TAACCCACCT GTCCATGGAG CGCTTATAGT TTCAACTGTT
CTTGGAGATC CAGAGTTGAA GAAGTTATGG CTCAACGAAG TCAAGGGCAT GGCAGATCGC ATCATCGGAA TGAGGACCAC
ACTACGAGAG AACTTGGAAA AGAGGAATTC TCCTTTGCCC TGGCAGCACA TAACCAATCA GATTGGTATG TTCTGCTACA
GTGGATTGAC ACCGGAACAG GTTGATCTTA TGACAAGCAA GTTTCATATT TACATGACCC GTAATGGTCG TATCAGTATG
GCTGGTCTTA ATACGGGCAA TGTGGGATAT GTTGCTGACG CTATCCATGA GGTTACAAAA TCTTCCTAA

>Vigan.06G112600.01
MAISLKGESL RRIIVGTRFM SPSWFRSIEP APKDPILGVT EAFLADQSPN KVNVGVGAYR DDDGKAVVLE CVREAERRIA
GNQFMEYLPI GGSIKMVEES LKLAYGDNSE FIKDKRIAAV QALSGTGACR LFAAFQQRFH PNSQIYIPVP TWANHHNIWR
DAGVSMKTFR YYHPESKGLD FEGLMNDMKN APDGSFFLLH ACAHNPTGVD PSEEQWREIS SQIKAKGHFP FFDMAYQGFA
SGDPERDAKA IRIFLEDGHL IGLAQSYAKN MGLYGQRVGC LSVLCEDEKQ AVAVKSQLQL IARPMYSNPP VHGALIVSTV
LGDPELKKLW LNEVKGMADR IIGMRTTLRE NLEKRNSPLP WQHITNQIGM FCYSGLTPEQ VDLMTSKFHI YMTRNGRISM
AGLNTGNVGY VADAIHEVTK SS*