GBrowse Details

Vigan.06G115600.01

Basic Information:
Name: Vigan.06G115600.01
Multiple alignment
Variant Information
Position: Chr06:22543533..22550290 (+ strand)
Length: 6758
Functional Information:
Description: Similar to Uncharacterized protein. [I1KEN4, Glycine max]
GO: Biological Process: tricarboxylic acid cycle (GO:0006099)
Biological Process: carbon fixation (GO:0015977)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964)
InterPro: Pyruvate/Phosphoenolpyruvate kinase-like domain (IPR015813)
Phosphoenolpyruvate carboxylase, active site (IPR018129)
Phosphoenolpyruvate carboxylase (IPR021135)
Phosphoenolpyruvate carboxylase, bacterial/plant-type (IPR022805)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.70,4.29,12.83,1.47,8.79,10.02,9.01,12.38
Arabidopsis thaliana homolog: AT1G53310.1, AT2G42600.2, AT3G14940.1
Automatic updates:
Name: PQ763683 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula phosphoenolpyruvate carboxylase 4 (PEPC4) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:22543533..22543922 (+ strand)
Length: 390
Type: five_prime_UTR
Position: Chr06:22543923..22544090 (+ strand)
Length: 168
Type: CDS
Position: Chr06:22544737..22545131 (+ strand)
Length: 395
Type: CDS
Position: Chr06:22545338..22545422 (+ strand)
Length: 85
Type: CDS
Position: Chr06:22546146..22546368 (+ strand)
Length: 223
Type: CDS
Position: Chr06:22546616..22546719 (+ strand)
Length: 104
Type: CDS
Position: Chr06:22546812..22546899 (+ strand)
Length: 88
Type: CDS
Position: Chr06:22547112..22547266 (+ strand)
Length: 155
Type: CDS
Position: Chr06:22547819..22548817 (+ strand)
Length: 999
Type: CDS
Position: Chr06:22549124..22549510 (+ strand)
Length: 387
Type: CDS
Position: Chr06:22549592..22549888 (+ strand)
Length: 297
Type: CDS
Position: Chr06:22549889..22550290 (+ strand)
Length: 402
Type: three_prime_UTR


>Vigan.06G115600.01
TCCTAAAACC ATGCCCCCCA TCTCTCTCTG TGTTGTGGCT TTGTTGAAGT TCTACACTTT CTTTCTGAAT CTTTTCGTGC
AGAGATCATA GGAGGAAGAA CTATTAGCTT TGATCCTACG AGATCTCTCT TAGTCTCTTT ACCCTTTGTT GCTTTAATTC
TCTGCTTTTG ATCTTGAGGC CACCACATTG CATAACACTC GTGAAGCACC TTTTCGTTTC CAGAATATTG CATCACTCTC
GTAAAACGCT TTTCACTCAG AGTGAAAAGC AAAGCCACTG AAATTGTGTG TTCTGTTGTG TTGTTTGATA CAGATATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATTTATATA TAGCTATATA TACAGAGAGG ATGGCCACAA
GGAAACTTGA GAAGATGGCT TCAATTGATG CTCAGTTGCG GTTGCTGGCA CCAAGTAAGG TTTCTGATGA TGACAAGCTT
GTTGAGTACG ATGCTTTGTT GCTGGACCGC TTCCTTGACA TTCTTCAGGA TTTGCATGGC AGTGATATTA GAGAAACTGT
TCAAGATTGT TATGAACTGT CTGCTGAGTA TGAAAGGCAG AATAACCCTC AGAAGTTGGA GGAACTTGGG AACATGCTAA
CTGGTCTTGA CGCTGGGGAT TCTATTGTGA TTTCTAAGTC GTTTGCTCAT ATGCTTAATT TGGCCAACTT GGCTGAAGAA
GTTCAAATTG CCTACCGTAG AAGGATTAAG TTATTGAAGA AGGGTGATTT TGCTGACGAG AATTCTGCTA TCACGGAGTC
AGATATTGAA GAGACCTTCA AGAGGCTTGT GAATCAACTG AAGAAGACCC CTCAAGAAAT CTTTGATGCT TTGAAGAGCC
AAACTGTAGA TTTGGTCCTA ACTGCTCATC CTACTCAGTC TGTTCGTAGA TCTTTGTTGC AAAAGCATGG CAGGATTAGG
GATTGTTTGA CACAATTGTA TGCTAAAGAC ATAACACCAG ATGATAAGCA GGAGCTTGAT GAGGCTTTAC AAAGAGAGAT
ACAAGCTGCA TTTCGTACAG ATGAAATTCG CAGGACCCCT CCTACACCTC AAGATGAGAT GAGAGCAGGA ATGAGCTACT
TTCACGAGAC CCTCTGGAAA GGCATACCAA AATTTTTGCG CCGCATTGAC ACAGCTCTGA AGAACATTGG CATAAATGAA
CGTGTTCCAC ATAATGCCCC TGTTATTCAA TTCTCTTCTT GGATGGGAGG AGATCGTGAT GGTAATCCCC GGGTAACTCC
AGAAGTTACA AGGGATGTGT GTTTGCTAGC TAGAATGATG GCTGCTAATT TGTACTTCTC TCAGATTGAG GATCTCATGT
TTGAGTTGTC AATGTGGCGC TGCAATGATG AGCTACGTCT TTGTTCTGAT GAACTCCTTA CCTCCTTAAG GAGAGATGCA
AAACATTATA TTGAGTTTTG GAAACAGATT CCTCCAAGTG AGCCATATCG TGTTATTCTC AGTGATGTAA GGGACAAATT
ATATAATACA CGGGAACGTG CTCGGCAGTT GTTAGCCAAT GGAAGTTCTG AAATCCCTGA GGAGACTACC TTCACAAATG
TCGAACAGTT CCTGGAGCCT CTTGAACTGT GTTATAGATC GCTGTGTGCA TGTGGTGACC AACCAATAGC TGATGGAAGC
CTTCTTGATT TCTTGCGCCA AGTTTCCACA TTTGGGCTTT CACTTGTAAG ACTTGATATC CGTCAAGAAT CAGATCGGCA
CACTGATGTT ATGGATGCTA TTACAAAGCA CTTGGAGATT GGATCTTATC GAGAATGGTC CGAGGAACGC AGGCAGGAAT
GGTTGCTATC TGAGCTCAGT GGAAAGCGCC CTCTCTTTGG CCCCGATCTT CCTAAAACAG ATGAAATTGC TGATGTATTG
GAAACCTTCC ATGTCATTGC TGAACTTCCT TCAGACAGCT TTGGTGCTTA TATCATCTCA ATGGCAACAG CTCCATCTGA
TGTGCTTGCT GTAGAACTTT TACAACGTGA ATGTCATGTG AAGCAACCAT TAAGGGTTGT GCCATTGTTT GAAAAACTTG
CTGATCTTGA GGCTGCTCCT GCTGCAGTAG CCCGCTTATT CTCTATAGAT TGGTACAGAA ACCGTATCAA TGGGAAACAA
GAAGTTATGA TAGGGTACTC AGACTCAGGA AAAGATGCTG GCCGTCTCTC TGCAGCATGG GCACTGTACA AGGCTCAAGA
GGAACTCATA AAGGTTGCAA AAGACTTAGG TGTTAAGCTT ACAATGTTCC ATGGCAGAGG AGGGACTGTG GGAAGAGGAG
GAGGTCCCAC TCATCTTGCT ATATTATCTC AGCCACCAGA TACTATTCAT GGCTCACTTC GGGTAACAGT GCAGGGTGAA
GTTATTGAAC AGTCATTTGG AGAGGAGCAC TTGTGCTTCA GAACACTTCA GCGTTTCACT GCTGCTACAC TTGAGCATGG
AATGCACCCT CCTGTGGCAC CAAAACCAGA ATGGCGTGCC CTCATGGATG AGATGGCAGT CATTGCTACT GAGGAGTATC
GCTCCGTTGT TTTCCAGGAA CCCCGTTTCG TTGAGTACTT CCGATGTGCA ACACCCGAGT TGGAGTATGG AAGAATGAAC
ATTGGCAGTC GTCCATCAAA AAGAAAGCCA AGCGGAGGAA TTGAATCACT CCGTGCAATC CCTTGGATCT TTGCTTGGAC
TCAGACAAGG TTCCATCTGC CTGTATGGCT TGGCTTCGGG GCAGCATTTA GGCATGTAAT TAAGAAGGAT CCAAAGAATC
TGCAAATGCT TCAAGATATG TATAATCAAT GGCCTTTCTT CAGGGTCAGC CTTGACTTAG TTGAGATGGT GTTTGCCAAG
GGAGACCCAG GAATTGCAGC CCTTTATGAT AAACTCCTAG TGACAGAAGA ACTGTGGCCA TTTGGTGAGC GATTAAGGTC
CATGTATGAA GAAACCAAGA GCCTTCTCCT TCAGGTTGCT GGGCACAGAG ATATCCTTGA AGGAGACCCC TACTTGAAGC
AAAGACTTCG TCTTCGTGAT TCATACACCA CAACCCTTAA TGTCCTGCAA GCCTACACAT TGAAGCGAAT CCGTGATCCT
GACTACCATG TGAACTTGAA GCCACACTTG TCCAAAGACT ACATGGAATC AAGCAACCCA GCTGCTGAGC TTGTGAAACT
CAACCCTACT AGTGAATATG CTCCCGGTCT GGAAGATACC CTTATTTTAA CAATGAAGGG TATAGCTGCT GGCATGCAGA
ACACAGGTTA AGCTATGTGG CTTTGTTACC TTTTCTTTGC AAGTGTCTTT GTGGCTTTGG ATACATACTT TTTAACCAAA
GTTGTTGGCT ACAAGAGTGA ACTAGCTCTA AATAACAGTT AATCTATCTT TTTATCATGC AATAAAACGG ACCTTGATTT
TAACTGCATT CTCTTCACTT TGGGATTAGT ATCTTATTAA AATTTCAAAA TGATGGGGGC TACAAGGCAC CCTCTGTGTT
CGACGCTCTC AAATTCGGTT ACATGTGGAA CAAACGAACA AACCTATCAG ATGTTCACCA TAAAGGGAAC ATGTGTCAGT
GTGTGGTCCA AAAGTGACCA ACTTCGTGAA TGTCAATACC CATTTGAATC TGTGCCAATG TTTTGAACCT TTTAGCACTA
GTGTACTATT TTC

>Vigan.06G115600.01
ATGGCCACAA GGAAACTTGA GAAGATGGCT TCAATTGATG CTCAGTTGCG GTTGCTGGCA CCAAGTAAGG TTTCTGATGA
TGACAAGCTT GTTGAGTACG ATGCTTTGTT GCTGGACCGC TTCCTTGACA TTCTTCAGGA TTTGCATGGC AGTGATATTA
GAGAAACTGT TCAAGATTGT TATGAACTGT CTGCTGAGTA TGAAAGGCAG AATAACCCTC AGAAGTTGGA GGAACTTGGG
AACATGCTAA CTGGTCTTGA CGCTGGGGAT TCTATTGTGA TTTCTAAGTC GTTTGCTCAT ATGCTTAATT TGGCCAACTT
GGCTGAAGAA GTTCAAATTG CCTACCGTAG AAGGATTAAG TTATTGAAGA AGGGTGATTT TGCTGACGAG AATTCTGCTA
TCACGGAGTC AGATATTGAA GAGACCTTCA AGAGGCTTGT GAATCAACTG AAGAAGACCC CTCAAGAAAT CTTTGATGCT
TTGAAGAGCC AAACTGTAGA TTTGGTCCTA ACTGCTCATC CTACTCAGTC TGTTCGTAGA TCTTTGTTGC AAAAGCATGG
CAGGATTAGG GATTGTTTGA CACAATTGTA TGCTAAAGAC ATAACACCAG ATGATAAGCA GGAGCTTGAT GAGGCTTTAC
AAAGAGAGAT ACAAGCTGCA TTTCGTACAG ATGAAATTCG CAGGACCCCT CCTACACCTC AAGATGAGAT GAGAGCAGGA
ATGAGCTACT TTCACGAGAC CCTCTGGAAA GGCATACCAA AATTTTTGCG CCGCATTGAC ACAGCTCTGA AGAACATTGG
CATAAATGAA CGTGTTCCAC ATAATGCCCC TGTTATTCAA TTCTCTTCTT GGATGGGAGG AGATCGTGAT GGTAATCCCC
GGGTAACTCC AGAAGTTACA AGGGATGTGT GTTTGCTAGC TAGAATGATG GCTGCTAATT TGTACTTCTC TCAGATTGAG
GATCTCATGT TTGAGTTGTC AATGTGGCGC TGCAATGATG AGCTACGTCT TTGTTCTGAT GAACTCCTTA CCTCCTTAAG
GAGAGATGCA AAACATTATA TTGAGTTTTG GAAACAGATT CCTCCAAGTG AGCCATATCG TGTTATTCTC AGTGATGTAA
GGGACAAATT ATATAATACA CGGGAACGTG CTCGGCAGTT GTTAGCCAAT GGAAGTTCTG AAATCCCTGA GGAGACTACC
TTCACAAATG TCGAACAGTT CCTGGAGCCT CTTGAACTGT GTTATAGATC GCTGTGTGCA TGTGGTGACC AACCAATAGC
TGATGGAAGC CTTCTTGATT TCTTGCGCCA AGTTTCCACA TTTGGGCTTT CACTTGTAAG ACTTGATATC CGTCAAGAAT
CAGATCGGCA CACTGATGTT ATGGATGCTA TTACAAAGCA CTTGGAGATT GGATCTTATC GAGAATGGTC CGAGGAACGC
AGGCAGGAAT GGTTGCTATC TGAGCTCAGT GGAAAGCGCC CTCTCTTTGG CCCCGATCTT CCTAAAACAG ATGAAATTGC
TGATGTATTG GAAACCTTCC ATGTCATTGC TGAACTTCCT TCAGACAGCT TTGGTGCTTA TATCATCTCA ATGGCAACAG
CTCCATCTGA TGTGCTTGCT GTAGAACTTT TACAACGTGA ATGTCATGTG AAGCAACCAT TAAGGGTTGT GCCATTGTTT
GAAAAACTTG CTGATCTTGA GGCTGCTCCT GCTGCAGTAG CCCGCTTATT CTCTATAGAT TGGTACAGAA ACCGTATCAA
TGGGAAACAA GAAGTTATGA TAGGGTACTC AGACTCAGGA AAAGATGCTG GCCGTCTCTC TGCAGCATGG GCACTGTACA
AGGCTCAAGA GGAACTCATA AAGGTTGCAA AAGACTTAGG TGTTAAGCTT ACAATGTTCC ATGGCAGAGG AGGGACTGTG
GGAAGAGGAG GAGGTCCCAC TCATCTTGCT ATATTATCTC AGCCACCAGA TACTATTCAT GGCTCACTTC GGGTAACAGT
GCAGGGTGAA GTTATTGAAC AGTCATTTGG AGAGGAGCAC TTGTGCTTCA GAACACTTCA GCGTTTCACT GCTGCTACAC
TTGAGCATGG AATGCACCCT CCTGTGGCAC CAAAACCAGA ATGGCGTGCC CTCATGGATG AGATGGCAGT CATTGCTACT
GAGGAGTATC GCTCCGTTGT TTTCCAGGAA CCCCGTTTCG TTGAGTACTT CCGATGTGCA ACACCCGAGT TGGAGTATGG
AAGAATGAAC ATTGGCAGTC GTCCATCAAA AAGAAAGCCA AGCGGAGGAA TTGAATCACT CCGTGCAATC CCTTGGATCT
TTGCTTGGAC TCAGACAAGG TTCCATCTGC CTGTATGGCT TGGCTTCGGG GCAGCATTTA GGCATGTAAT TAAGAAGGAT
CCAAAGAATC TGCAAATGCT TCAAGATATG TATAATCAAT GGCCTTTCTT CAGGGTCAGC CTTGACTTAG TTGAGATGGT
GTTTGCCAAG GGAGACCCAG GAATTGCAGC CCTTTATGAT AAACTCCTAG TGACAGAAGA ACTGTGGCCA TTTGGTGAGC
GATTAAGGTC CATGTATGAA GAAACCAAGA GCCTTCTCCT TCAGGTTGCT GGGCACAGAG ATATCCTTGA AGGAGACCCC
TACTTGAAGC AAAGACTTCG TCTTCGTGAT TCATACACCA CAACCCTTAA TGTCCTGCAA GCCTACACAT TGAAGCGAAT
CCGTGATCCT GACTACCATG TGAACTTGAA GCCACACTTG TCCAAAGACT ACATGGAATC AAGCAACCCA GCTGCTGAGC
TTGTGAAACT CAACCCTACT AGTGAATATG CTCCCGGTCT GGAAGATACC CTTATTTTAA CAATGAAGGG TATAGCTGCT
GGCATGCAGA ACACAGGTTA A

>Vigan.06G115600.01
MATRKLEKMA SIDAQLRLLA PSKVSDDDKL VEYDALLLDR FLDILQDLHG SDIRETVQDC YELSAEYERQ NNPQKLEELG
NMLTGLDAGD SIVISKSFAH MLNLANLAEE VQIAYRRRIK LLKKGDFADE NSAITESDIE ETFKRLVNQL KKTPQEIFDA
LKSQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLTQLYAKD ITPDDKQELD EALQREIQAA FRTDEIRRTP PTPQDEMRAG
MSYFHETLWK GIPKFLRRID TALKNIGINE RVPHNAPVIQ FSSWMGGDRD GNPRVTPEVT RDVCLLARMM AANLYFSQIE
DLMFELSMWR CNDELRLCSD ELLTSLRRDA KHYIEFWKQI PPSEPYRVIL SDVRDKLYNT RERARQLLAN GSSEIPEETT
FTNVEQFLEP LELCYRSLCA CGDQPIADGS LLDFLRQVST FGLSLVRLDI RQESDRHTDV MDAITKHLEI GSYREWSEER
RQEWLLSELS GKRPLFGPDL PKTDEIADVL ETFHVIAELP SDSFGAYIIS MATAPSDVLA VELLQRECHV KQPLRVVPLF
EKLADLEAAP AAVARLFSID WYRNRINGKQ EVMIGYSDSG KDAGRLSAAW ALYKAQEELI KVAKDLGVKL TMFHGRGGTV
GRGGGPTHLA ILSQPPDTIH GSLRVTVQGE VIEQSFGEEH LCFRTLQRFT AATLEHGMHP PVAPKPEWRA LMDEMAVIAT
EEYRSVVFQE PRFVEYFRCA TPELEYGRMN IGSRPSKRKP SGGIESLRAI PWIFAWTQTR FHLPVWLGFG AAFRHVIKKD
PKNLQMLQDM YNQWPFFRVS LDLVEMVFAK GDPGIAALYD KLLVTEELWP FGERLRSMYE ETKSLLLQVA GHRDILEGDP
YLKQRLRLRD SYTTTLNVLQ AYTLKRIRDP DYHVNLKPHL SKDYMESSNP AAELVKLNPT SEYAPGLEDT LILTMKGIAA
GMQNTG*