GBrowse Details

Vigan.06G115800.01

Basic Information:
Name: Vigan.06G115800.01
Multiple alignment
Variant Information
Position: Chr06:22557423..22561481 (- strand)
Length: 4059
Functional Information:
Description: Similar to ATP synthase protein I. [G7JCK8, Medicago truncatula]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.74,18.98,39.00,159.12,18.65,44.42,19.29,32.90
Arabidopsis thaliana homolog: AT2G31040.1
Automatic updates:
Name: KM399999 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP synthase protein I-related protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM400017 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris ATP synthase protein I-related protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:22557423..22557600 (- strand)
Length: 178
Type: three_prime_UTR
Position: Chr06:22557601..22557733 (- strand)
Length: 133
Type: CDS
Position: Chr06:22558382..22558450 (- strand)
Length: 69
Type: CDS
Position: Chr06:22558718..22558813 (- strand)
Length: 96
Type: CDS
Position: Chr06:22559336..22559427 (- strand)
Length: 92
Type: CDS
Position: Chr06:22559565..22559645 (- strand)
Length: 81
Type: CDS
Position: Chr06:22559894..22559989 (- strand)
Length: 96
Type: CDS
Position: Chr06:22560166..22560244 (- strand)
Length: 79
Type: CDS
Position: Chr06:22560350..22560399 (- strand)
Length: 50
Type: CDS
Position: Chr06:22561046..22561357 (- strand)
Length: 312
Type: CDS
Position: Chr06:22561358..22561481 (- strand)
Length: 124
Type: five_prime_UTR


>Vigan.06G115800.01
ATTGTTTGGC AACCAACTAG TATGTGTAAA CATGACAGAC ACACAATTGA CGACATCATT TCTTTGTAAC TGTCGGCCCT
TCATTGCCCT GTCTTCGTAG GATTGCATTG CCATAACACG AAAAATGGCA CTTGTGAGCC ACGTTTGTGT GCGCTGTGCA
GCCACACCCA CTTCTCCAGA GTCTCCAAGC TCCGCGCCCT TGAGAGACCC AAAGCAGACC AAAGTTATCC TTCCCAAGAA
GAAGCCCGTG AAATGGTCCA CTGGGATGGC TCCTGGGGAG TACGGTGGTC CTCCCACCAC CACCAAGCTC CGCAAGTACT
GGGGTGGCGA TGATGAAGAC CCTTTGGCCT CTGATGACTA TATGTGGAAC AAAGAGTTTG TGGGTCGCTT CAAAAAGTTG
ATTCAAGATC CTCAAGCTCC AACCCCTCCT GCAAAGGAAG AGCCTTCAGG GTTTCTAAGC TTAAATAGAG TCATGAGCCT
GGACAGTTTG GAAGTTGATT TGAGTAAAGA ACTTACAGCT CCTTTAAATC ATAATGCACA CAAGCAAGCT GAGGCAGAAA
CTGATGAGAC TAGAAATAAC AGGGTAAAAT ATAGAGCAGC ACCAACACGC CGGGAGCAAG AAAAATGGAA TAGAGCTACC
AAGGCTGCAA CTGGGGGAAG TGATGTGATG TTCCGCGAAA TAAAGCAGTC TCGGGAAGAT CCTAAAGTAT TGGCTGCTCA
AGCTCAAGAG CAGTATGATA AGTTAAAGAA GAAGTTGCAA GTCCTTACCT TGGGTATTGG TGGTGTTGGT CTGGTTTCAG
CATACGTTTC TTACACTCCT GAGATTGCAG CTAGTTTTGG AGCTGGTTTT CTTGGTTCTT TGGCGTACAT TCGCATGCTG
GGAAGTAGTG TGGACTCGCT AAAAACTGAT GGTGCAAAGG CTGTTGTCAA GGGAGCAATT GGGCAGCCAA GATTGCTGGT
TCCTGTTGTT CTAGTCATGG TCTATAACCG CTGGAATGCT ATTCTGGTTC CAGAATTTGG ATATATGCAC TTAGAATTGA
TACCAATGCT CGTAGGCTTT TTCACATACA AGATTGCTAC TTTTGCTCAA GCTATAGAGG AGGCAATTAC TGTAGCTACA
AGAAAGACCT GAAGAATGCA TTGTCATTGT ATATGGGGTT TCTCCCACAT TTGGAGCCTA TAAATTGTAT TTGTTTATGT
TTTTCCATAT TTGGATTATT GATACTTATA TATTTAGTCT ACTATCCCAT ATGCTTTATG TCTTAAGTCT TTTCTCCCAC
AGCAAGAACT TTTCGATTTC ATTTTTCTCA 

>Vigan.06G115800.01
ATGGCACTTG TGAGCCACGT TTGTGTGCGC TGTGCAGCCA CACCCACTTC TCCAGAGTCT CCAAGCTCCG CGCCCTTGAG
AGACCCAAAG CAGACCAAAG TTATCCTTCC CAAGAAGAAG CCCGTGAAAT GGTCCACTGG GATGGCTCCT GGGGAGTACG
GTGGTCCTCC CACCACCACC AAGCTCCGCA AGTACTGGGG TGGCGATGAT GAAGACCCTT TGGCCTCTGA TGACTATATG
TGGAACAAAG AGTTTGTGGG TCGCTTCAAA AAGTTGATTC AAGATCCTCA AGCTCCAACC CCTCCTGCAA AGGAAGAGCC
TTCAGGGTTT CTAAGCTTAA ATAGAGTCAT GAGCCTGGAC AGTTTGGAAG TTGATTTGAG TAAAGAACTT ACAGCTCCTT
TAAATCATAA TGCACACAAG CAAGCTGAGG CAGAAACTGA TGAGACTAGA AATAACAGGG TAAAATATAG AGCAGCACCA
ACACGCCGGG AGCAAGAAAA ATGGAATAGA GCTACCAAGG CTGCAACTGG GGGAAGTGAT GTGATGTTCC GCGAAATAAA
GCAGTCTCGG GAAGATCCTA AAGTATTGGC TGCTCAAGCT CAAGAGCAGT ATGATAAGTT AAAGAAGAAG TTGCAAGTCC
TTACCTTGGG TATTGGTGGT GTTGGTCTGG TTTCAGCATA CGTTTCTTAC ACTCCTGAGA TTGCAGCTAG TTTTGGAGCT
GGTTTTCTTG GTTCTTTGGC GTACATTCGC ATGCTGGGAA GTAGTGTGGA CTCGCTAAAA ACTGATGGTG CAAAGGCTGT
TGTCAAGGGA GCAATTGGGC AGCCAAGATT GCTGGTTCCT GTTGTTCTAG TCATGGTCTA TAACCGCTGG AATGCTATTC
TGGTTCCAGA ATTTGGATAT ATGCACTTAG AATTGATACC AATGCTCGTA GGCTTTTTCA CATACAAGAT TGCTACTTTT
GCTCAAGCTA TAGAGGAGGC AATTACTGTA GCTACAAGAA AGACCTGA

>Vigan.06G115800.01
MALVSHVCVR CAATPTSPES PSSAPLRDPK QTKVILPKKK PVKWSTGMAP GEYGGPPTTT KLRKYWGGDD EDPLASDDYM
WNKEFVGRFK KLIQDPQAPT PPAKEEPSGF LSLNRVMSLD SLEVDLSKEL TAPLNHNAHK QAEAETDETR NNRVKYRAAP
TRREQEKWNR ATKAATGGSD VMFREIKQSR EDPKVLAAQA QEQYDKLKKK LQVLTLGIGG VGLVSAYVSY TPEIAASFGA
GFLGSLAYIR MLGSSVDSLK TDGAKAVVKG AIGQPRLLVP VVLVMVYNRW NAILVPEFGY MHLELIPMLV GFFTYKIATF
AQAIEEAITV ATRKT*