GBrowse Details

Vigan.06G119600.01

Basic Information:
Name: Vigan.06G119600.01
Multiple alignment
Variant Information
Position: Chr06:23292654..23296206 (+ strand)
Length: 3553
Functional Information:
Description: Similar to Uncharacterized protein. [I1KET7, Glycine max]
InterPro: PMR5 N-terminal domain (IPR025846)
PC-Esterase (IPR026057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,0.00,6.50,11.31,9.14,6.34,60.26,21.60
Automatic updates:
Name: NM_001254609 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100786668 (LOC100786668), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:23292654..23292860 (+ strand)
Length: 207
Type: five_prime_UTR
Position: Chr06:23292861..23293126 (+ strand)
Length: 266
Type: CDS
Position: Chr06:23293348..23293519 (+ strand)
Length: 172
Type: CDS
Position: Chr06:23294896..23295071 (+ strand)
Length: 176
Type: CDS
Position: Chr06:23295149..23295307 (+ strand)
Length: 159
Type: CDS
Position: Chr06:23295560..23295848 (+ strand)
Length: 289
Type: CDS
Position: Chr06:23295849..23296206 (+ strand)
Length: 358
Type: three_prime_UTR


>Vigan.06G119600.01
AAAAATATAT ATTAAACACT AAAAAACAAC AGGAAACGAG GAAACATTGC AAGTTGTTCT GTTTTCACAT TGCATGTGCA
TTCGTTTGTG AAACACCTCT TTCTCCTTCT CTCACGGTTC CATTATATAA GACCTTGATT TGGGGGCAAG TTTCTATTGA
CTCCTCGTCC TTTCAAAGAA TCACGGGGAG GGTTCAGAAC CCGAGAAATG GGTCTGTCAT TGGTACATGC TCTGTTCTTA
ACTCTGTTTC TCCTCTGCCT CAAAACAAAA GCAGAGGACT CTAGTCCAAC CAGAAAGCTC GCAGGAGCAT GCAACTTGTT
CAGAGGGAAA TGGGTCTACG ATGCTTCATA CCCTCTCTAT GACCCTTCTT CTTGTCCCTT CGTAGATCCA CAGTTCAATT
GCCAAAAGCA TGGTCGCTCT GATCAACTCT ACCAGAAATA TAGGTGGACG CCATTTTCTT GTCCCTTGCC AAGGTTCAAT
GGATTGGACT TTTTGCAGAG ATACAGAGGG AAGAAGATTA TGTTTGTTGG TGACTCCTTG AGCTTGAACC AGTTCAATTC
ATTGGCATGT ATGATTCATG CTTGGGTGCC AAAATCTAGG AGCACTTTCA GTCAAAGGGA TGCTCTTTCC AAAGTGACAT
TTGAGGACTA TGGCCTTGAG ATATACTTGT ACAGAACAGC ATATTTAGTG GATCTTGACC GTGAGAAAGT GGGACGAGTT
TTGAAACTAG ACTCTATCAA GAACGGTGAC TCGTGGATGG GGATGGACGC GCTGATCTTC AACACGTGGC ACTGGTGGAC
CCACACCGGA AGCTCACAAC CGTGGGACTA TGTTGAGGTG GATAATAGGT TGTTCAAAGA CATGAACCGT TTTGTTGCAT
ACTATAAAGG CCTAACAACT TGGGCTAAGT GGATTGAAAG AAACGTCAAT CCATCACAAA CCAAGGTCTT CTTCTTGGGA
ATTTCTCCTG TGCATTACCA GGGGAGAGAT TGGAATGAAC CGGCAAAGTC ATGTATGAGT GAAAGAGAAC CATTCTTTGG
ACTGAAGTAC CCTGCAGGAA CACCGATGGC TTGGGTGGTG GTGAACAAAG TTTTGAAGAG GATAAAAAAA CCTGTGTATT
TCTTGGATGT GACCACACTC TCACAGTACA GAAAAGATGC ACACCCTGAA GTCTATAGTG GAGTTATGGC AGTAGATTGC
AGCCACTGGT GTCTTCCAGG GCTTCCTGAC ACTTGGAATG AACTTCTCAC TGCAGTTCTT TCTGCTTGAA AACAAACACA
TATAACTTTG TTTACTAGCT CCAACTTCTT AGAGGAAAAC CAATTGTTTT CGACTTTAGG AGATTTTTAT TTCGCATTTT
GCTTCTCTTG TAATTCTTCA ATAAAAGGGC TTTATGCTCC TAATTGTAAA TGTAGATCAA TGTGGCAGAA ATTTGCCTTC
AATTGTACCA AATACCATTC TCAATTTGAA ACTCATTGTG GAAACATGTG TCACTCGTTG TAAAGTTGTT GATCGATCCC
CTTTTCTAAA GTAACAAAAA ATTATGTAAT GTGGATTTTT CAGATGAAAA TTGTACCCTT TTAAAAATTT TAAGTTCTGT
ATATGAATTT GATGTATTTT AATAGTT

>Vigan.06G119600.01
ATGGGTCTGT CATTGGTACA TGCTCTGTTC TTAACTCTGT TTCTCCTCTG CCTCAAAACA AAAGCAGAGG ACTCTAGTCC
AACCAGAAAG CTCGCAGGAG CATGCAACTT GTTCAGAGGG AAATGGGTCT ACGATGCTTC ATACCCTCTC TATGACCCTT
CTTCTTGTCC CTTCGTAGAT CCACAGTTCA ATTGCCAAAA GCATGGTCGC TCTGATCAAC TCTACCAGAA ATATAGGTGG
ACGCCATTTT CTTGTCCCTT GCCAAGGTTC AATGGATTGG ACTTTTTGCA GAGATACAGA GGGAAGAAGA TTATGTTTGT
TGGTGACTCC TTGAGCTTGA ACCAGTTCAA TTCATTGGCA TGTATGATTC ATGCTTGGGT GCCAAAATCT AGGAGCACTT
TCAGTCAAAG GGATGCTCTT TCCAAAGTGA CATTTGAGGA CTATGGCCTT GAGATATACT TGTACAGAAC AGCATATTTA
GTGGATCTTG ACCGTGAGAA AGTGGGACGA GTTTTGAAAC TAGACTCTAT CAAGAACGGT GACTCGTGGA TGGGGATGGA
CGCGCTGATC TTCAACACGT GGCACTGGTG GACCCACACC GGAAGCTCAC AACCGTGGGA CTATGTTGAG GTGGATAATA
GGTTGTTCAA AGACATGAAC CGTTTTGTTG CATACTATAA AGGCCTAACA ACTTGGGCTA AGTGGATTGA AAGAAACGTC
AATCCATCAC AAACCAAGGT CTTCTTCTTG GGAATTTCTC CTGTGCATTA CCAGGGGAGA GATTGGAATG AACCGGCAAA
GTCATGTATG AGTGAAAGAG AACCATTCTT TGGACTGAAG TACCCTGCAG GAACACCGAT GGCTTGGGTG GTGGTGAACA
AAGTTTTGAA GAGGATAAAA AAACCTGTGT ATTTCTTGGA TGTGACCACA CTCTCACAGT ACAGAAAAGA TGCACACCCT
GAAGTCTATA GTGGAGTTAT GGCAGTAGAT TGCAGCCACT GGTGTCTTCC AGGGCTTCCT GACACTTGGA ATGAACTTCT
CACTGCAGTT CTTTCTGCTT GA

>Vigan.06G119600.01
MGLSLVHALF LTLFLLCLKT KAEDSSPTRK LAGACNLFRG KWVYDASYPL YDPSSCPFVD PQFNCQKHGR SDQLYQKYRW
TPFSCPLPRF NGLDFLQRYR GKKIMFVGDS LSLNQFNSLA CMIHAWVPKS RSTFSQRDAL SKVTFEDYGL EIYLYRTAYL
VDLDREKVGR VLKLDSIKNG DSWMGMDALI FNTWHWWTHT GSSQPWDYVE VDNRLFKDMN RFVAYYKGLT TWAKWIERNV
NPSQTKVFFL GISPVHYQGR DWNEPAKSCM SEREPFFGLK YPAGTPMAWV VVNKVLKRIK KPVYFLDVTT LSQYRKDAHP
EVYSGVMAVD CSHWCLPGLP DTWNELLTAV LSA*