VIGGS:GBrowse

Vigan.06G121600.01

Basic Information:

Name:	Vigan.06G121600.01 Multiple alignment Variant Information
Position:	Chr06:23606487..23609864 (+ strand)
Length:	3378

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KEV3, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:21.65,11.25,9.35,9.44,16.66,28.10,22.18,14.68
Arabidopsis thaliana homolog:	AT5G60860.1

Automatic updates:

Name:	NM_001317491 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein RABA1f (LOC100781889), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:23606487..23606752 (+ strand)
Length:	266
Type:	five_prime_UTR

Position:	Chr06:23606753..23606973 (+ strand)
Length:	221
Type:	CDS

Position:	Chr06:23609035..23609467 (+ strand)
Length:	433
Type:	CDS

Position:	Chr06:23609468..23609864 (+ strand)
Length:	397
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G121600.01
GGAAGCAAAG CCATTTTGAT TGTTATCATT GTTTGATATC ATTCATTCCA TTCTTTCTTT GAATGCTTCT CCCTCCATAC
CCTTCTGCCA TTACAACATC AACAACATTA ACACCATCCT TTTTCTCTCT CTTCTTCATT TCCAATGCTG AAACTTGCAG
GGTTCATAGA CACTGACCCA ATTGAATTCC CGCAAGAGAA TTGAAGAAAA AACCATCAAG TGAGGATCTT TTGAAGGCAC
GGATCGCGTG AGAAGGAAGA GGGAAAATGG GTGCGTATAG AGCGGACGAT GATTACGACT ACTTGTTCAA GGTGGTGTTG
ATCGGAGACT CCGGCGTTGG GAAATCGAAC CTCTTGTCTC GATTCACGAA GAACGAATTC AGTTTGGAAT CTAAATCCAC
CATTGGCGTT GAATTCGCCA CCCGCAGCAT CCACGTCGAT GACAAGATCG TAAAGGCGCA AATTTGGGAC ACCGCGGGCC
AAGAAAGATA TCGTGCAATC ACAAGCGCGT ATTATCGAGG GGCCGTTGGA GCATTGCTTG TGTATGATGT TACCAGACAT
GTGACTTTTG AAAACGTGGA GAGATGGTTA AAGGAGCTTC GTGATCACAC AGATGCAAAC ATTGTAATCA TGCTGGTAGG
GAACAAGGCG GATCTGCGCC ACCTACGAGC GGTGGCGACG GACGACGCGA AGGCATTCGC CGAGCGAGAA AACACATTCT
TCATGGAAAC ATCTGCTCTT GAGTCGTTGA ATGTTGACAA TGCCTTCACA GAAGTTCTGA CTCAGATATA TCGTGTTGTT
AGTAGGAAGA CTCTTGAGAT TGGAGATGAC CCTGCAGCGT TGCCTAAGGG CCAGACCATC AATGTTGGCT CCAAGGATGA
TGTCTCAGCT GTCAAAAAGG CTGGATGCTG CTCTGCATAA TTTCACAACC CTTTTGCACC ACAATGCTAT ATCTATTTCT
GCATGATGAT TCAACCAACC AAGTGAAAGC TACTTACACT TATCTTTTTA TGTAATTTCT CCCTCATATC TTGCCAAGTT
TGTTGTTTTC TTTTTTCTCT CTTTTCTTTT CATGTAAGCA TGGTTTGTTC ATAGGAATGA TGTCATGTTG CCCTTAGATA
TACACAGAAT TTGCTGTTTT GTATTGAGTG AAAGCTACAT CTGGTTCTTA GATTGATTGA TTGATTCAGA ATCTGTTACA
ATCTCATCAT TCTTTCTCAA AGTTTCCGTT CCACTGGAAC AAGACATAAA CTTTGATAGA TAGTTAGTGT TATTCAATCC
TGAAAGAGTT ATGGCTTCTT GATATGACAG CATTTCA

[show][hide][copy]CDS

>Vigan.06G121600.01
ATGGGTGCGT ATAGAGCGGA CGATGATTAC GACTACTTGT TCAAGGTGGT GTTGATCGGA GACTCCGGCG TTGGGAAATC
GAACCTCTTG TCTCGATTCA CGAAGAACGA ATTCAGTTTG GAATCTAAAT CCACCATTGG CGTTGAATTC GCCACCCGCA
GCATCCACGT CGATGACAAG ATCGTAAAGG CGCAAATTTG GGACACCGCG GGCCAAGAAA GATATCGTGC AATCACAAGC
GCGTATTATC GAGGGGCCGT TGGAGCATTG CTTGTGTATG ATGTTACCAG ACATGTGACT TTTGAAAACG TGGAGAGATG
GTTAAAGGAG CTTCGTGATC ACACAGATGC AAACATTGTA ATCATGCTGG TAGGGAACAA GGCGGATCTG CGCCACCTAC
GAGCGGTGGC GACGGACGAC GCGAAGGCAT TCGCCGAGCG AGAAAACACA TTCTTCATGG AAACATCTGC TCTTGAGTCG
TTGAATGTTG ACAATGCCTT CACAGAAGTT CTGACTCAGA TATATCGTGT TGTTAGTAGG AAGACTCTTG AGATTGGAGA
TGACCCTGCA GCGTTGCCTA AGGGCCAGAC CATCAATGTT GGCTCCAAGG ATGATGTCTC AGCTGTCAAA AAGGCTGGAT
GCTGCTCTGC ATAA

[show][hide][copy]PROTEIN

>Vigan.06G121600.01
MGAYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS
AYYRGAVGAL LVYDVTRHVT FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAVATDD AKAFAERENT FFMETSALES
LNVDNAFTEV LTQIYRVVSR KTLEIGDDPA ALPKGQTINV GSKDDVSAVK KAGCCSA*