VIGGS:GBrowse

Vigan.06G122400.01

Basic Information:

Name:	Vigan.06G122400.01 Multiple alignment Variant Information
Position:	Chr06:23778417..23782295 (- strand)
Length:	3879

Functional Information:

Description:	Similar to OPA3-like protein-like. [XP_006469062.1, Citrus sinensis]
InterPro:	Optic atrophy 3-like (IPR010754)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:5.16,9.38,2.37,2.39,2.93,2.78,2.32,2.62

Automatic updates:

Name:	NM_001251816 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527103 (LOC100527103), transcript variant 1, mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:23778417..23778661 (- strand)
Length:	245
Type:	three_prime_UTR

Position:	Chr06:23778662..23779201 (- strand)
Length:	540
Type:	CDS

Position:	Chr06:23781703..23781837 (- strand)
Length:	135
Type:	CDS

Position:	Chr06:23781942..23782073 (- strand)
Length:	132
Type:	CDS

Position:	Chr06:23782074..23782295 (- strand)
Length:	222
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G122400.01
ATCAATTTCG CAAACTTCGC GAAGGTTTTC GAATATGAAT AAGTACTAAT TTTTTTCCTT TTTACTTTTC CGGTACCTTG
TTCTGTTCTG AGCAGACCAT CTTCTTGTTA AGCAAGAAAG ATACGGTGAT GAAATACGGT CGTGGATCAC ACGCACCCAA
CAGAGGTTCC AAATTCGCTT CCCTGTTATC AACTTCGTAG CTCACTTTCC TATTCTCGAG AGATGGTGGT GCTTCCCGTG
GTGAAGCTGG CAACACTCGC CCTCAAAACC GCGTGTAAAC CAATCGCCAG CAGGCTCAAG AAGGAGGCCG GTTACCACCC
TAAGTTTCGC AGCTTCATAA TCGCCATTGC CCAGGCCAAT CACAGATTGA CGACGAGAGT GCAGAGAAGA ATCTACGGTC
GTGCCACCGA TGTTGCAATC CGTCCTTTGA ACGAGGAGAA GGCTGTGCAA GCTGCTGCGG ATTTGCTTGG AGAACTCTTT
GTGTTCTCGG TTGCTGGAGC TGCTGTCATT TTTGAGGTGC AAAGAAGTTC AAGAGCAGAA GCAAGAAAGG AAGAAATACG
TAGACAGGAA ATACAGGTTG TCTTTCTGCC TTCTCTGTTA TGGATGATCC TTTGTGAGGG TGAAAAGTTG AGGGATTCAT
TGAAGAAAAG TTGGTCTTGT AATCAAATAT TTTCTCTGAA TGCTATCAAG GATGGAGGTT TAAATTTGGA TTTTTGCCAT
CTCATCTACG CTATACTTTT ACCAACCTAT CTATTTAGTC TTGTTTACTT TCATTGGAAT TGGAGGAAAA AGTTATTGGG
GGACCAAAAA TATTCTAAAT CTCATGGACG TACTCAAGTT TTTGTGACTT TGCACTTTTG CAGGCAATAC AGACGAGGAA
TGAAGAGTTG GCTAGAGAAA TGGAACTTCT TGCACACAAA CTTGAAAAGC TGGAACAACT TTCTAGAGGC CGAGGATTAT
TTGGCACTCT TAACTTCGGA CCCACTCATG TCTCCGAAAA TACAAAATCC AATTGATTGC TGCAACTAAG CATTGACCAC
AGATTTTGTT AAACAAACCA TTGCTCTTGG TTTGGAAAGG AAACATAACT GATAAAATAG CAGAACACAT AAATTCTGCC
TGCTAATTAC AATTTTCTAG GCTTTGGATG ATCTATACAT ATGTTTCCTC CAAAATTTTG TTCATCCTCA TGGTAGCTCA
AATGATATTG TAATTTGTAG CAATTGTCTG ATATTCTATA AAACAAATAC AAATCAGATA CAAGTTGTTT CCTT

[show][hide][copy]CDS

>Vigan.06G122400.01
ATGGTGGTGC TTCCCGTGGT GAAGCTGGCA ACACTCGCCC TCAAAACCGC GTGTAAACCA ATCGCCAGCA GGCTCAAGAA
GGAGGCCGGT TACCACCCTA AGTTTCGCAG CTTCATAATC GCCATTGCCC AGGCCAATCA CAGATTGACG ACGAGAGTGC
AGAGAAGAAT CTACGGTCGT GCCACCGATG TTGCAATCCG TCCTTTGAAC GAGGAGAAGG CTGTGCAAGC TGCTGCGGAT
TTGCTTGGAG AACTCTTTGT GTTCTCGGTT GCTGGAGCTG CTGTCATTTT TGAGGTGCAA AGAAGTTCAA GAGCAGAAGC
AAGAAAGGAA GAAATACGTA GACAGGAAAT ACAGGTTGTC TTTCTGCCTT CTCTGTTATG GATGATCCTT TGTGAGGGTG
AAAAGTTGAG GGATTCATTG AAGAAAAGTT GGTCTTGTAA TCAAATATTT TCTCTGAATG CTATCAAGGA TGGAGGTTTA
AATTTGGATT TTTGCCATCT CATCTACGCT ATACTTTTAC CAACCTATCT ATTTAGTCTT GTTTACTTTC ATTGGAATTG
GAGGAAAAAG TTATTGGGGG ACCAAAAATA TTCTAAATCT CATGGACGTA CTCAAGTTTT TGTGACTTTG CACTTTTGCA
GGCAATACAG ACGAGGAATG AAGAGTTGGC TAGAGAAATG GAACTTCTTG CACACAAACT TGAAAAGCTG GAACAACTTT
CTAGAGGCCG AGGATTATTT GGCACTCTTA ACTTCGGACC CACTCATGTC TCCGAAAATA CAAAATCCAA TTGATTGCTG
CAACTAA

[show][hide][copy]PROTEIN

>Vigan.06G122400.01
MVVLPVVKLA TLALKTACKP IASRLKKEAG YHPKFRSFII AIAQANHRLT TRVQRRIYGR ATDVAIRPLN EEKAVQAAAD
LLGELFVFSV AGAAVIFEVQ RSSRAEARKE EIRRQEIQVV FLPSLLWMIL CEGEKLRDSL KKSWSCNQIF SLNAIKDGGL
NLDFCHLIYA ILLPTYLFSL VYFHWNWRKK LLGDQKYSKS HGRTQVFVTL HFCRQYRRGM KSWLEKWNFL HTNLKSWNNF
LEAEDYLALL TSDPLMSPKI QNPIDCCN*