GBrowse Details

Vigan.06G133900.01

Basic Information:
Name: Vigan.06G133900.01
Multiple alignment
Variant Information
Position: Chr06:25722899..25726936 (+ strand)
Length: 4038
Functional Information:
Description: Similar to Uncharacterized protein. [I1LS12, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Tetraspanin (IPR000301)
Tetraspanin/Peripherin (IPR018499)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:105.66,35.71,23.65,28.08,28.68,42.44,29.64,25.90
Arabidopsis thaliana homolog: AT2G20740.1
Automatic updates:
Name: NM_001249433 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527459 (LOC100527459), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:25722899..25723089 (+ strand)
Length: 191
Type: five_prime_UTR
Position: Chr06:25723090..25723262 (+ strand)
Length: 173
Type: CDS
Position: Chr06:25724105..25724204 (+ strand)
Length: 100
Type: CDS
Position: Chr06:25724899..25724979 (+ strand)
Length: 81
Type: CDS
Position: Chr06:25725105..25725209 (+ strand)
Length: 105
Type: CDS
Position: Chr06:25726010..25726198 (+ strand)
Length: 189
Type: CDS
Position: Chr06:25726199..25726936 (+ strand)
Length: 738
Type: three_prime_UTR


>Vigan.06G133900.01
ATAAAGTAAT CTAAAGGAAA AACTTATAAC CTCCTTGCTC TCTTCGAATC CGTTAAGCGT ACGAGCCCTA GATTTCGATC
TAGGGTTTCT TTGCGCTCTA GTTCAATTTT CAATTCTGCT TTCATTGGAT TCTGGGGGTT AAGTTGTTCT TACATTATTC
CATTTCCCAC GAATTAGAAA TCACAAAGAA AATGGTGAGG GTGTTGAGAA GCTGCATTCA ATCCATATTG AAGCTGGTGA
ACTCGGTGAT TGGGATGGCC GGGTTAGCCA TGATTCTGTA CTCCGCTTGG ATGATTAGGG TTTGGCAGAG GGAGATGGGT
GACCTCCCCT TTGGTCACGA TTCTGATGAT TATCCACCTC CATGGTTCAT TTACACGTTT CTTGGCCTTG GAGCGGTGTT
CTGTGTAGTA ACGTGTTTAG GTCATGTAGC TGCAGAAACT GCTAATGGCT GTTGCCTGTA TTTGTATATG GTGTTTGTGG
TTTTGCTTCT CATGCTGGAG GCTGCATTAA CTGTTGATGT ATTTGTGAAT CAGGACTGGG AGAAGGACTT CCCAAAGGAC
CCCTCTGGGA GTTTTGATCA GTTCAAGAAT TTCATCAGAT CAAATTACGA GATGTGCAAA TGGGTAGGCC TGTTTCTTGT
TTCTGTACAG GGACTCTCTT TACTATTGGC AATGATACTC AAAGCACTAG GACCACATCA ATATTATGAT AGTGATGATG
AATATACTCC TGACAGGGTG CCACTCTTGA AGAATGCTCC ACCTCAATAT GTTGTTGTTG ATCCAGGATA TGCACATGGA
AATGAAACAT GGAATAGGGT AAGTGGCAAG GTAAACTAGA TTGGAATTCT TTTCTTGATC TTAACTTTCT TATTTGAGTC
GTCACGGATT TTCTTTATGA TTTAGTTTCA CTACTACTCT GTTTAATTAC GTATTATCAT GCCCCAGTCT CATTGTTAGG
TGGTTTGAAT AGGCAAGTTG GCTTATAGAC TGTACGTCGG TGTATACTGA AAATTTGAAA GTGATGATGT ATTAGATTGA
ATCTTTAGTA CTTATGATAG CGATCTCAAT TTTCTTCATT CATTTTTCGG AACTTTTTTT TGGAAATTAG AGCATTAACC
TCTACTGATG CTTTATTGTT GCATGATATT GATTTAATTT TAATGTTAAC ACTATTCTGT CAGTGGTCAA ATACATTATG
AAGTCGCTTT ATGATTTCAT TTAGTCACTA TTTATTTGTT TCCTTGGTGA GACAAGTCCT GGTTATTGTT TTACTGTATA
GTGGTCAGCA TGTTAAATCT TAGCTCTAGC TTTGAACTTC TCTCCATTTA AATGAAAGTT TCCTTCTTTA ATCAGTCAAA
TAGGTAAGGC CATAGCCTTC AATTTAACCT TGACGTCTGG ATCCATGGAA AGTGAGGCAA GCAGTCCTTT TTTATGCCAA
TTGGTTTAGA AGATGACCTA CACGCTGGAG ACGGATTAAC TATTGAATCA ATGGCTATGG GAGAAACAAG TGCTTATCGT
GATCCTGGGG ACAAATAAAC CATTTTCACA CAGTTGTGAG TAAACGTGTG TAATCAT

>Vigan.06G133900.01
ATGGTGAGGG TGTTGAGAAG CTGCATTCAA TCCATATTGA AGCTGGTGAA CTCGGTGATT GGGATGGCCG GGTTAGCCAT
GATTCTGTAC TCCGCTTGGA TGATTAGGGT TTGGCAGAGG GAGATGGGTG ACCTCCCCTT TGGTCACGAT TCTGATGATT
ATCCACCTCC ATGGTTCATT TACACGTTTC TTGGCCTTGG AGCGGTGTTC TGTGTAGTAA CGTGTTTAGG TCATGTAGCT
GCAGAAACTG CTAATGGCTG TTGCCTGTAT TTGTATATGG TGTTTGTGGT TTTGCTTCTC ATGCTGGAGG CTGCATTAAC
TGTTGATGTA TTTGTGAATC AGGACTGGGA GAAGGACTTC CCAAAGGACC CCTCTGGGAG TTTTGATCAG TTCAAGAATT
TCATCAGATC AAATTACGAG ATGTGCAAAT GGGTAGGCCT GTTTCTTGTT TCTGTACAGG GACTCTCTTT ACTATTGGCA
ATGATACTCA AAGCACTAGG ACCACATCAA TATTATGATA GTGATGATGA ATATACTCCT GACAGGGTGC CACTCTTGAA
GAATGCTCCA CCTCAATATG TTGTTGTTGA TCCAGGATAT GCACATGGAA ATGAAACATG GAATAGGGTA AGTGGCAAGG
TAAACTAG

>Vigan.06G133900.01
MVRVLRSCIQ SILKLVNSVI GMAGLAMILY SAWMIRVWQR EMGDLPFGHD SDDYPPPWFI YTFLGLGAVF CVVTCLGHVA
AETANGCCLY LYMVFVVLLL MLEAALTVDV FVNQDWEKDF PKDPSGSFDQ FKNFIRSNYE MCKWVGLFLV SVQGLSLLLA
MILKALGPHQ YYDSDDEYTP DRVPLLKNAP PQYVVVDPGY AHGNETWNRV SGKVN*