GBrowse Details

Vigan.06G134000.01

Basic Information:
Name: Vigan.06G134000.01
Multiple alignment
Variant Information
Position: Chr06:25795177..25798605 (+ strand)
Length: 3429
Functional Information:
Description: Similar to Uncharacterized protein. [H9TN46, Glycine max]
GO: Biological Process: sexual reproduction (GO:0019953)
Cellular Component: extracellular region (GO:0005576)
InterPro: Major pollen allergen Lol pI (IPR005795)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.15,14.06,1.60,9.79,8.18,5.61,13.57
Arabidopsis thaliana homolog: AT4G28250.1
Automatic updates:
Name: NM_001258009 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-B3-like (EXPB4), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001267069 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-B3-like (EXPB7), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:25795177..25795389 (+ strand)
Length: 213
Type: five_prime_UTR
Position: Chr06:25795390..25795564 (+ strand)
Length: 175
Type: CDS
Position: Chr06:25796120..25796420 (+ strand)
Length: 301
Type: CDS
Position: Chr06:25796876..25797005 (+ strand)
Length: 130
Type: CDS
Position: Chr06:25797991..25798185 (+ strand)
Length: 195
Type: CDS
Position: Chr06:25798186..25798605 (+ strand)
Length: 420
Type: three_prime_UTR


>Vigan.06G134000.01
CCTTTCGTAA ATAACACCAA ATGAATGGAC CACATCGTAA ACACGGTTAC GCCTGTTGTA CTATAAGAAA CCCAAAACTC
CTTTTAACTG TCTAACTAAA CTAAGCCCAC AGACACTCAC CACTCTGCCG CCACCACACT GTCGGCAACG CCCCAAACGC
CACTCTTTCG TTCCAACCGC CTCGGCGCGC CACCCACTTT GCTTCTGTGC ACAATGCAGC TACACCGTGC CTCCACCGCG
GCAAAAGGCC TTGCCTGCTT CATTTTTGCC TTGAAACTCG TGCTGTTGTA CGCCGCCGAG GGACAGCCTC AGCACCGCGG
TCCCGACCTA CATTGGTACC CCGGAACCGC CACCTGGTAC GGCGACCCCG AAGGAGACGG AAGCACCGGT GGGGCATGTG
GGTATGGTTC GATGGTGGAT GTGAAGCCGT TCAGGGCGCG AGTGGGAGCA GTGGGGCCCT TGCTGTTCAT GAACGGCGAA
GGGTGCGGTG CCTGTTACAA GGTGAGGTGT TTGGACAAGA GCATATGTTC GAGACGAGCT GTGACAGTAA TAATTACCGA
CGAGTGCCCA GGTTGCCCCT CTGACCAAAC ACACTTCGAT CTCAGTGGTG CCGCCTTTGG TCGCATGGCC ATTGCTGGCG
AGAACGGTCC TCTCAGAGAC CGTGGTCAAA TCCCTGTCAT TTACCGAAGA ACACCGTGTA AATATCCCGG TAGAAAAATT
GCTTTTCATG TCAACGAAGG CTCCACACCA TTTTGGCTAT CACTTCTGGT TGAGTTTGAG GACGCAGAAG GAGATATTGG
CTCCATGCAT ATACGAGAAT CGGGATCTAC AGAATGGCTG CAAATGAATC ACCTCTGGGG TGCAAATTGG TGCATTATTG
GGGGACCTTT AAGAGGACCA TTCTCAGTGA AATTGAGCTC TTCCACTGGT AGAAGCCTCT CTGCAAGAGA TGTTATTCCG
GGAAGTTGGG TTCCAAAGGC GACTTACACT TCTCGGCTAA ATTTCTACCC TTAGTCACAA GCTTTTGATG AAACTAATGA
ATACATTTGA AGCAGTTAAA AGTTGGTGAT GTCCCATAAC TCAAAAGTAG TCTCCATGGG CCTCCAACTC TCTTTTTCTT
CCCTTTGTTT GCTATATATA CATTAGTTTC TCTTCTTTTT TGATGAGAAA AGTAGCCATT TGGAGTGCAC AAGGGCATCC
AATGGGGCTT CTGCTTTCTT ATTTTTTTGA ATATTGATTT TGTATACCTA CTTTTGTGGT GTGTTGTAAC AGTTGGTAGT
AAATGTGTGT AATGTGGCCA TCTCCAAATT GGAGAGAGAG CTTGTAGCTT TGTAATTCCT AATGTGTGTA GTGGTCCCAT
TGGTGTTTTA ATGGACATTT ATTATTGAAT GTTTTAACTT TGATGTCATT GTCTCGTGAT AAACTCTACA TTGT

>Vigan.06G134000.01
ATGCAGCTAC ACCGTGCCTC CACCGCGGCA AAAGGCCTTG CCTGCTTCAT TTTTGCCTTG AAACTCGTGC TGTTGTACGC
CGCCGAGGGA CAGCCTCAGC ACCGCGGTCC CGACCTACAT TGGTACCCCG GAACCGCCAC CTGGTACGGC GACCCCGAAG
GAGACGGAAG CACCGGTGGG GCATGTGGGT ATGGTTCGAT GGTGGATGTG AAGCCGTTCA GGGCGCGAGT GGGAGCAGTG
GGGCCCTTGC TGTTCATGAA CGGCGAAGGG TGCGGTGCCT GTTACAAGGT GAGGTGTTTG GACAAGAGCA TATGTTCGAG
ACGAGCTGTG ACAGTAATAA TTACCGACGA GTGCCCAGGT TGCCCCTCTG ACCAAACACA CTTCGATCTC AGTGGTGCCG
CCTTTGGTCG CATGGCCATT GCTGGCGAGA ACGGTCCTCT CAGAGACCGT GGTCAAATCC CTGTCATTTA CCGAAGAACA
CCGTGTAAAT ATCCCGGTAG AAAAATTGCT TTTCATGTCA ACGAAGGCTC CACACCATTT TGGCTATCAC TTCTGGTTGA
GTTTGAGGAC GCAGAAGGAG ATATTGGCTC CATGCATATA CGAGAATCGG GATCTACAGA ATGGCTGCAA ATGAATCACC
TCTGGGGTGC AAATTGGTGC ATTATTGGGG GACCTTTAAG AGGACCATTC TCAGTGAAAT TGAGCTCTTC CACTGGTAGA
AGCCTCTCTG CAAGAGATGT TATTCCGGGA AGTTGGGTTC CAAAGGCGAC TTACACTTCT CGGCTAAATT TCTACCCTTA
G

>Vigan.06G134000.01
MQLHRASTAA KGLACFIFAL KLVLLYAAEG QPQHRGPDLH WYPGTATWYG DPEGDGSTGG ACGYGSMVDV KPFRARVGAV
GPLLFMNGEG CGACYKVRCL DKSICSRRAV TVIITDECPG CPSDQTHFDL SGAAFGRMAI AGENGPLRDR GQIPVIYRRT
PCKYPGRKIA FHVNEGSTPF WLSLLVEFED AEGDIGSMHI RESGSTEWLQ MNHLWGANWC IIGGPLRGPF SVKLSSSTGR
SLSARDVIPG SWVPKATYTS RLNFYP*